Difference between revisions of "Circompara2"
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| − | + | <code>$ module load circompara2/0.1.2.1 | |
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| + | $circompara2 | ||
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Latest revision as of 21:36, 1 April 2022
Description
CirComPara2 is a computational pipeline to detect, quantify, and correlate expression of linear and circular RNAs from RNA-seq data that combines multiple circRNA-detection methods.
Environment Modules
Run module spider circompara2 to find out what environment modules are available for this application.
System Variables
- HPC_CIRCOMPARA2_DIR - installation directory
- HPC_CIRCOMPARA2_BIN - executable directory
Usage Example
$ module load circompara2/0.1.2.1
$circompara2
Citation
If you publish research that uses circompara2 you have to cite it as follows:
Enrico Gaffo, Alessia Buratin, Anna Dal Molin, Stefania Bortoluzzi, Sensitive, reliable and robust circRNA detection from RNA-seq with CirComPara2, Briefings in Bioinformatics, 2021;, bbab418, https://doi.org/10.1093/bib/bbab418