Difference between revisions of "ChromEvol"

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[[Category:Software]][[Category:Bioinformatics]][[Category:Phylogenetics]]
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[[Category:Software]][[Category:Biology]][[Category:NGS]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|chromevol}}
 
|{{#vardefine:app|chromevol}}
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*Find the chromosome base-number of a phylogeny
 
*Find the chromosome base-number of a phylogeny
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
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==Environment Modules==
===Serial===
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
* {{#var:app}}
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==
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__NOTOC____NOEDITSECTION__
 
__NOTOC____NOEDITSECTION__
=Validation=
 
* Validated 4/5/2018
 

Latest revision as of 13:34, 15 August 2022

Description

chromevol website  

chromEvol is a free, open-source program for analyzing changes in chromosome-number along a phylogeny. Given a phylogeny and chromosome number data, the program infers the location and type of chromosome number transitions along the tree.

Features
  • Test hypotheses about chromosome numbe evolution
  • Determine ploidy levels for taxa
  • Find the chromosome base-number of a phylogeny

Environment Modules

Run module spider chromevol to find out what environment modules are available for this application.

System Variables

  • HPC_CHROMEVOL_DIR - installation directory




Citation

If you publish research that uses chromevol you have to cite it as follows:

Mayrose et al, 2010