Difference between revisions of "ChromEvol"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|chromevol}} |{{#vardefine:url|http://www.tau.ac.i...") |
Moskalenko (talk | contribs) |
||
| Line 10: | Line 10: | ||
|{{#vardefine:testing|}} <!--PROFILING--> | |{{#vardefine:testing|}} <!--PROFILING--> | ||
|{{#vardefine:faq|}} <!--FAQ--> | |{{#vardefine:faq|}} <!--FAQ--> | ||
| − | |{{#vardefine:citation|}} <!--CITATION--> | + | |{{#vardefine:citation|1}} <!--CITATION--> |
|{{#vardefine:installation|}} <!--INSTALLATION--> | |{{#vardefine:installation|}} <!--INSTALLATION--> | ||
|} | |} | ||
| Line 65: | Line 65: | ||
{{#if: {{#var: citation}}|==Citation== | {{#if: {{#var: citation}}|==Citation== | ||
If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | + | ||
| + | [http://www.tau.ac.il/~itaymay/papers/chromEvol.pdf Mayrose et al, 2010] | ||
|}} | |}} | ||
<!--Installation--> | <!--Installation--> | ||
Revision as of 14:26, 10 October 2014
Description
chromEvol is a free, open-source program for analyzing changes in chromosome-number along a phylogeny. Given a phylogeny and chromosome number data, the program infers the location and type of chromosome number transitions along the tree.
- Features
- Test hypotheses about chromosome numbe evolution
- Determine ploidy levels for taxa
- Find the chromosome base-number of a phylogeny
Required Modules
Serial
- chromevol
System Variables
- HPC_{{#uppercase:chromevol}}_DIR
Citation
If you publish research that uses chromevol you have to cite it as follows: