Difference between revisions of "Checkv"
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Latest revision as of 13:58, 18 October 2022
Description
CheckV is a fully automated command-line pipeline for assessing the quality of single-contig viral genomes, including identification of host contamination for integrated proviruses, estimating completeness for genome fragments, and identification of closed genomes.
Environment Modules
Run module spider checkv to find out what environment modules are available for this application.
System Variables
- HPC_CHECKV_DIR - installation directory
- HPC_CHECKV_BIN - executable directory
- CHECKVDB - reference data directory