Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION).
- HPC_CANU_DIR - installation directory
- HPC_CANU_BIN - executable directory
- HPC_CANU_DOC - documentation directory
When running Canu you should specify Memory and CPU usage in your command. e.g.
#SBATCH --cpus-per-task=8 #SBATCH --mem=10g
If you publish research that uses canu you have to cite it as follows: