Difference between revisions of "CRISPRanalyzer"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|crispranalyzer}} |{{#vardefine:url|https://github.com/boutroslab/CRISPRAnaly...") |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
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<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 14:12, 15 August 2022
Description
CRISPRAnalyzeR has been developed to provide a fully-interactive and exploratory analysis of pooled CRISPR Screens with user experience in mind. You can analyse your screen using 8 different analysis methods as well as perform gene annotation, gene set analysis and get detailed information about your sgRNAs - all in a convenient web-browser interface.
Environment Modules
Run module spider crispranalyzer to find out what environment modules are available for this application.
System Variables
- HPC_CRISPRANALYZER_DIR - installation directory
- HPC_CRISPRANALYZER_BIN - executable directory
Citation
If you publish research that uses crispranalyzer you have to cite it as follows:
http://biorxiv.org/content/early/2017/02/20/109967