Difference between revisions of "CNVkit"

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==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
+
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
  
 
<!--Configuration-->
 
<!--Configuration-->

Latest revision as of 21:06, 6 December 2019

Description

cnvkit website  

A command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from targeted DNA sequencing.

Required Modules

Serial

  • gcc/5.2.0
  • cnvkit

System Variables

  • HPC_CNVKIT_DIR - installation directory
  • HPC_CNVKIT_BIN - executable directory