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clipseqtools website  

CLIPSeqTools is a collection of command line applications used for the analysis of CLIP-Seq datasets. CLIP-Seq stands for UV cross-linking and immunoprecipitation coupled with high-throughput sequencing.

CLIPSeqTools has applications for a wide range of analyses that will give an in depth view of the analysed dataset. Examples of such analyses are: genome read coverage, distibution of reads on genic elements, motif enrichment, relative position of reads of two datasets, differential gene counts, etc).

Required Modules


  • clipseqtools

System Variables

  • HPC_CLIPSEQTOOLS_DIR - installation directory