Difference between revisions of "CLIFinder"
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executalbe directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:11, 6 December 2019
Description
L1 Chimeric Transcripts (LCTs) are transcribed from LINE 1 antisense promoter and include the L1 5’UTR sequence in antisense orientation followed by the adjacent genomic region.
CLIFinder v0.4.1 is a tool, specifically designed to identify potential LCTs from one or several oriented RNA-seq paired-end reads in the human genome.
CLIFinder v0.4.1 is customizable to detect transcripts initiated by different types of repeat elements.
Environment Modules
Run module spider clifinder to find out what environment modules are available for this application.
System Variables
- HPC_CLIFINDER_DIR - installation directory
- HPC_CLIFINDER_BIN - executalbe directory
- HPC_CLIFINDER_DOC - documentation directory