Description

cgatools website

The Complete Genomics Analysis Tools (cgatools) is an open source project to provide tools for downstream analysis of Complete Genomics data. The focus is to provide command line utilities, but a C++ API is available as well. The general areas of functionality include genome comparison, format conversion, and reference tools.

Required Modules

modules documentation

Serial

cgatools

System Variables

HPC_{{#uppercase:cgatools}}_DIR - installation directory
HPC_CGATOOLS_BIN - executable directory

Citation

If you publish research that uses cgatools you have to cite it as follows: R. Drmanac, et. al. Science 327(5961), 78. [DOI: 10.1126/science.1181498]

Validation

Validated 4/5/2018

CGATools