Difference between revisions of "CGATools"

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See the [[{{PAGENAME}}_Install]] page for {{#var: app}} installation notes.|}}
See the [[{{PAGENAME}}_Install]] page for {{#var: app}} installation notes.|}}
* Validated 4/5/2018

Revision as of 17:32, 5 April 2018


cgatools website  

The Complete Genomics Analysis Tools (cgatools) is an open source project to provide tools for downstream analysis of Complete Genomics data. The focus is to provide command line utilities, but a C++ API is available as well. The general areas of functionality include genome comparison, format conversion, and reference tools.

Required Modules

modules documentation


  • cgatools

System Variables

  • HPC_{{#uppercase:cgatools}}_DIR - installation directory
  • HPC_CGATOOLS_BIN - executable directory


If you publish research that uses cgatools you have to cite it as follows: R. Drmanac, et. al. Science 327(5961), 78. [DOI: 10.1126/science.1181498]


  • Validated 4/5/2018