CAP3

From UFRC
Revision as of 19:33, 31 October 2011 by Moskalenko (talk | contribs)
Jump to navigation Jump to search

Description

{{{name}}} website  
CAP3 is a sequence assembly program. See documentation at capdoc site. Template:App Location Intel processor optimized versions of cap3 and formcon are installed at HPC.

Opteron optimized versions of these binaries are named cap3-opteron and formcon-opteron.

Running the application using modules

To use cap3 with the environment modules system at HPC the following commands are available:

Get module information for cap3:

$module spider cap3

Load the default application module:

$module load cap3

The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:

  • HPC_CAP3_DIR - directory where cap3 is located.
  • HPC_CAP3_BIN - location of the CAP3 executables directory