Difference between revisions of "CAP3"

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__NOTOC__
 
__NOTOC__
 
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[[Category:Software]][[Category:Bioinformatics]][[Category:Genomics]]
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[[Category:Software]][[Category:Biology]][[Category:Assembly]]
 
{|
 
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<!--Main settings - REQUIRED-->
 
<!--Main settings - REQUIRED-->
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In addition, pcap binaries are also provided.
 
In addition, pcap binaries are also provided.
<!-- -->
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<!--Modules-->
==Required Modules==
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==Environment Modules==
[[Modules|modules documentation]]
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
===Serial===
 
*{{#var:app}}
 
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_CAP3_BIN - location of the CAP3 executables directory
 
* HPC_CAP3_BIN - location of the CAP3 executables directory
 
* HPC_CAP3_DOC - location of the CAP3 docs directory
 
* HPC_CAP3_DOC - location of the CAP3 docs directory

Latest revision as of 13:19, 15 August 2022

Description

cap3 website  

CAP3 is a sequence assembly program.

Intel processor optimized versions of cap3 and formcon are installed at HPC.

Opteron optimized versions of these binaries are named cap3-opteron and formcon-opteron.

In addition, pcap binaries are also provided.

Environment Modules

Run module spider cap3 to find out what environment modules are available for this application.

System Variables

  • HPC_CAP3_DIR - installation directory
  • HPC_CAP3_BIN - location of the CAP3 executables directory
  • HPC_CAP3_DOC - location of the CAP3 docs directory
  • HPC_CAP3_EXAMPLE - location of the CAP3 examples directory