Difference between revisions of "CAP3"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replace - "Usage policy" to "Usage Policy") |
Moskalenko (talk | contribs) m (Text replace - "{{#if: {{#var: mod}}|==Execution Environment and Modules== {{App_Module|app={{#var:app}}|intel={{#var:intel}}|mpi={{#var:mpi}}}}|}}" to "==Required Modules== modules documentation ===Serial=== *{{#var:app}}") |
||
| Line 42: | Line 42: | ||
In addition, pcap binaries are also provided. | In addition, pcap binaries are also provided. | ||
<!-- --> | <!-- --> | ||
| − | + | ==Required Modules== | |
| − | + | [[Modules|modules documentation]] | |
| + | ===Serial=== | ||
| + | *{{#var:app}} | ||
* HPC_CAP3_BIN - location of the CAP3 executables directory | * HPC_CAP3_BIN - location of the CAP3 executables directory | ||
* HPC_CAP3_DOC - location of the CAP3 docs directory | * HPC_CAP3_DOC - location of the CAP3 docs directory | ||
Revision as of 16:55, 10 August 2012
Description
CAP3 is a sequence assembly program. See documentation at capdoc site.
Intel processor optimized versions of cap3 and formcon are installed at HPC.
Opteron optimized versions of these binaries are named cap3-opteron and formcon-opteron.
In addition, pcap binaries are also provided.
Required Modules
Serial
- cap3
- HPC_CAP3_BIN - location of the CAP3 executables directory
- HPC_CAP3_DOC - location of the CAP3 docs directory
- HPC_CAP3_EXAMPLE - location of the CAP3 examples directory