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bismark website  

Bismark is a bisulfite read mapper and methylation caller.

Environment Modules

Run module spider bismark to find out what environment modules are available for this application.

System Variables

  • HPC_BISMARK_DIR - installation directory


If you publish research that uses bismark you have to cite it as follows:

Krueger F, Andrews SR. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics. 2011 Jun 1;27(11):1571-2. doi: 10.1093/bioinformatics/btr167. Epub 2011 Apr 14. PubMed PMID: 21493656; PubMed Central PMCID: PMC3102221.