Difference between revisions of "Bismark"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:GenomicsCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|bismark}} |{{#vardefine:url|http://www.bi...") |
Moskalenko (talk | contribs) m (Text replace - "{{App_Description|app={{#var:app}}|url={{#var:url}}}}|}}" to "{{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} ") |
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Bismark is a bisulfite read mapper and methylation caller. | Bismark is a bisulfite read mapper and methylation caller. | ||
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Revision as of 01:53, 10 August 2012
Description
Bismark is a bisulfite read mapper and methylation caller. Template:App Location
Available versions
- 0.7.4 (EL6)
Running the application using modules
To use bismark with the environment modules system at HPC the following commands are available:
Get module information for bismark:
$module spider bismark
Load the default application module:
$module load bismark
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_BISMARK_DIR - directory where bismark is located.