Difference between revisions of "Bismark"
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
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Revision as of 21:01, 6 December 2019
Description
Bismark is a bisulfite read mapper and methylation caller.
Required Modules
Serial
- bismark
System Variables
- HPC_BISMARK_DIR - installation directory
Citation
If you publish research that uses bismark you have to cite it as follows:
Krueger F, Andrews SR. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics. 2011 Jun 1;27(11):1571-2. doi: 10.1093/bioinformatics/btr167. Epub 2011 Apr 14. PubMed PMID: 21493656; PubMed Central PMCID: PMC3102221.
Validation
- Validated 4/5/2018