View source for Bedops

[[Category:Software]][[Category:Bioinformatics]][[Category:NGS]]
{|<!--CONFIGURATION: REQUIRED-->
|{{#vardefine:app|bedops}}
|{{#vardefine:url|http://www.uwencode.org/software}}
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|{{#vardefine:exe|}}            <!--ADDITIONAL INFO-->
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|{{#vardefine:policy|}}         <!--POLICY-->
|{{#vardefine:testing|}}       <!--PROFILING-->
|{{#vardefine:faq|}}             <!--FAQ-->
|{{#vardefine:citation|}}       <!--CITATION-->
|{{#vardefine:installation|}} <!--INSTALLATION-->
|}
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<!--Description-->
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BEDOPS is an open-source command-line toolkit that performs highly efficient
and scalable Boolean and other set operations, statistical calculations,
archiving, conversion and other management of genomic data of arbitrary
scale. Tasks can be easily split by chromosome for distributing whole-genome
analyses across a computational cluster.


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* {{#var:app}}
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==System Variables==
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
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{{#if: {{#var: conf}}|==Configuration==
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{{#if: {{#var: exe}}|==Additional Information==

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{{#if: {{#var: pbs}}|==PBS Script Examples==
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{{#if: {{#var: policy}}|==Usage Policy==

WRITE USAGE POLICY HERE (Licensing, usage, access).

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{{#if: {{#var: testing}}|==Performance==

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{{#if: {{#var: faq}}|==FAQ==
*'''Q:''' **'''A:'''|}}
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{{#if: {{#var: citation}}|==Citation==
If you publish research that uses {{#var:app}} you have to cite it as follows:

WRITE_CITATION_HERE

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{{#if: {{#var: installation}}|==Installation==
See the [[{{PAGENAME}}_Install]] page for {{#var: app}} installation notes.|}}
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=Validation=
* Validated 4/5/2018