Difference between revisions of "Bcl2fastq"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
|||
| Line 41: | Line 41: | ||
--> | --> | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:15, 6 December 2019
Description
bcl2fastq conversion software can be used to both demultiplex data and convert BCL files to FASTQ files. This software requires a Linux operating system. The bcl2fastq2 software can be used to convert BCL files from all Illumina sequencing systems running RTA version 2.0 and above. This is a change from the original information, which indicated that v2.16 could be used with all sequencers running RTA 1.18 and above: that information is no longer correct. For conversion of data generated on Illumina sequencing systems using versions of RTA before RTA 2.0, use bcl2fastq v1.8.4.
Required Modules
Serial
- bcl2fastq
System Variables
- HPC_BCL2FASTQ_DIR - installation directory
Validation
- Validate 4/5/2018