Difference between revisions of "Bcftools"
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Moskalenko (talk | contribs) (Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|bcftools}} |{{#vardefine:url|http://samtools.github.io/bcftools/}} <!--CONFIGURATION: OPTIONAL (|1}} m...") |
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Revision as of 18:46, 5 April 2018
Description
BCFtools package contains all the vcf* commands which previously lived in the htslib repository (such as vcfcheck, vcfmerge, vcfisec, etc.) and the samtools BCF calling from bcftools subdirectory of samtools. BCFtools are meant as a faster replacement for most of the perl VCFtools commands
Required Modules
Serial
- bcftools
System Variables
- HPC_{{#uppercase:bcftools}}_DIR
Validation
- Validated 4/5/2018