Difference between revisions of "Bamstats"

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m (Text replacement - "#uppercase" to "uc")
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Coverage statistics for a BED file. It uses the Cigar string instead of the start/end to compute the coverage.
 
Coverage statistics for a BED file. It uses the Cigar string instead of the start/end to compute the coverage.
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
+
==Environment Modules==
===Serial===
+
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
* {{#var:app}} - installation directory
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{uc:{{#var:app}}}}_DIR
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==
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<!--Turn the Table of Contents and Edit paragraph links ON/OFF-->
 
<!--Turn the Table of Contents and Edit paragraph links ON/OFF-->
 
__NOTOC____NOEDITSECTION__
 
__NOTOC____NOEDITSECTION__
=Validation=
 
* Validated 4/5/2018
 

Revision as of 19:50, 10 June 2022

Description

bamstats website  

Coverage statistics for a BED file. It uses the Cigar string instead of the start/end to compute the coverage.

Environment Modules

Run module spider bamstats to find out what environment modules are available for this application.

System Variables

  • HPC_BAMSTATS_DIR - installation directory