Difference between revisions of "Bamstats"

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m (Text replacement - "#uppercase" to "uc")
 
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[[Category:Software]]
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[[Category:Software]][[Category:Biology]][[Category:NGS]]
 
{|<!--CONFIGURATION: REQUIRED-->
 
{|<!--CONFIGURATION: REQUIRED-->
 
|{{#vardefine:app|bamstats}}
 
|{{#vardefine:app|bamstats}}
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Coverage statistics for a BED file. It uses the Cigar string instead of the start/end to compute the coverage.
 
Coverage statistics for a BED file. It uses the Cigar string instead of the start/end to compute the coverage.
 
<!--Modules-->
 
<!--Modules-->
==Required Modules==
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==Environment Modules==
===Serial===
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
* {{#var:app}} - installation directory
 
<!--
 
===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
-->
 
 
==System Variables==
 
==System Variables==
* HPC_{{uc:{{#var:app}}}}_DIR
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* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==
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<!--Turn the Table of Contents and Edit paragraph links ON/OFF-->
 
<!--Turn the Table of Contents and Edit paragraph links ON/OFF-->
 
__NOTOC____NOEDITSECTION__
 
__NOTOC____NOEDITSECTION__
=Validation=
 
* Validated 4/5/2018
 

Latest revision as of 18:01, 12 August 2022

Description

bamstats website  

Coverage statistics for a BED file. It uses the Cigar string instead of the start/end to compute the coverage.

Environment Modules

Run module spider bamstats to find out what environment modules are available for this application.

System Variables

  • HPC_BAMSTATS_DIR - installation directory