Difference between revisions of "Bakta"
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Latest revision as of 15:28, 12 August 2022
Bakta is a tool for the rapid & standardized annotation of bacterial genomes and plasmids from both isolates and MAGs. It provides dbxref-rich and sORF-including annotations in machine-readable JSON & bioinformatics standard file formats for automatic downstream analysis.
module spider Bakta to find out what environment modules are available for this application.
- HPC_BAKTA_DIR - installation directory
- HPC_BAKTA_BIN - executable directory
- BAKTA_DB - reference database directory
If you publish research that uses Bakta you have to cite it as follows:
Schwengers O., Jelonek L., Dieckmann M. A., Beyvers S., Blom J., Goesmann A. (2021). Bakta: rapid and standardized annotation of bacterial genomes via alignment-free sequence identification. Microbial Genomics, 7(11).