Difference between revisions of "BWA"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
||
| (2 intermediate revisions by the same user not shown) | |||
| Line 22: | Line 22: | ||
==Required Modules== | ==Required Modules== | ||
[[Modules|modules documentation]] | [[Modules|modules documentation]] | ||
| − | ===Serial=== | + | ===Serial and Parallel=== |
*{{#var:app}} | *{{#var:app}} | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
* HPC_BWA_BIN - executable directory | * HPC_BWA_BIN - executable directory | ||
* HPC_BWA_MAN - manpage directory | * HPC_BWA_MAN - manpage directory | ||
Revision as of 21:01, 6 December 2019
Description
Burrows-Wheeler Aligner (BWA) is an efficient program that aligns relatively short nucleotide sequences against a long reference sequence such as the human genome. It implements two algorithms, bwa-short and BWA-SW. The former works for query sequences shorter than 200bp and the latter for longer sequences up to around 100kbp. Both algorithms do gapped alignment. They are usually more accurate and faster on queries with low error rates.
Required Modules
Serial and Parallel
- bwa
System Variables
- HPC_BWA_DIR - installation directory
- HPC_BWA_BIN - executable directory
- HPC_BWA_MAN - manpage directory
- HPC_BWA_DOC - documentation directory