Difference between revisions of "BRATNextGen"

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==Required Modules==
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==Environment Modules==
===Serial===
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
* {{#var:app}}
 
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===Parallel (OpenMP)===
 
* intel
 
* {{#var:app}}
 
===Parallel (MPI)===
 
* intel
 
* openmpi
 
* {{#var:app}}
 
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==System Variables==
 
==System Variables==
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
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=Validation=
 
* Validate 4/5/2018
 

Revision as of 20:00, 10 June 2022

Description

BRATNextGen website  

BratNextGen is a software tool designed for the detection of recombination events within large bacterial data sets. BratNextGen can be used for analysing aligned whole genome data sets. The output of BratNextGen consists of detected recombinogenic segments.

Environment Modules

Run module spider BRATNextGen to find out what environment modules are available for this application.

System Variables

  • HPC_BRATNEXTGEN_DIR - installation directory