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branch website  
BRANCH is a software that extends de novo transfrags and identifies novel transfrags with DNA contigs or genes of close related species. BRANCH discovers novel exons first and then extends/joins fragmented de novo transfrags, so that the resulted transfrags are more complete.

Required Modules


  • branch

System Variables

  • HPC_{{#uppercase:branch}}_DIR


If you publish research that uses branch you have to cite it as follows: If you use BRANCH, please cite the following paper:

Bao E, Jiang T, Girke T (2013). BRANCH: boosting RNA-Seq assemblies with partial or related genomic sequences. Bioinformatics: epub.