Difference between revisions of "BPP"

From UFRC
Jump to navigation Jump to search
m (Text replacement - "#uppercase" to "uc")
 
Line 33: Line 33:
 
-->
 
-->
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR
+
* HPC_{{uc:{{#var:app}}}}_DIR
 
<!--Configuration-->
 
<!--Configuration-->
 
{{#if: {{#var: conf}}|==Configuration==
 
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 21:05, 6 December 2019

Description

bpp website  

The program BP&P implements the Bayesian methods of Yang (2002), Rannala & Yang (2003), Burgess & Yang (2008), and Yang & Rannala (2010), for estimating population sizes (theta), species divergence times (tau), and for delimiting species using multi-locus sequence data from several closely related species.

Required Modules

Serial

  • bpp

System Variables

  • HPC_BPP_DIR

Additional Information

Sample '.ctl' files are in the '$HPC_BPP_CTL' directory. You need to copy one of them to your current working directory and modify it before running bpp.




Validation

  • Validated 4/5/2018