Difference between revisions of "BIOMART"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|biomart}} |{{#vardefine:url|http://useast.ensembl.org/info/da...") |
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==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_CONF - configuration directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 19:31, 14 February 2018
Description
Tables of Ensembl data can be downloaded via the highly customisable BioMart data mining tool. The BioMart Perl API allow you to go a step further with BioMart and allow you to integrate BioMart Perl Code into custom Perl scripts.
Environment Modules
Run module spider biomart to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:biomart}}_DIR - installation directory
- HPC_{{#uppercase:biomart}}_BIN - executable directory
- HPC_{{#uppercase:biomart}}_CONF - configuration directory