Difference between revisions of "BFAST"

From UFRC
Jump to navigation Jump to search
m (Text replace - "]] {| <!--Main settings - REQUIRED-->" to "]] {|<!--Main settings - REQUIRED-->")
m (Text replace - "<!--Compiler and MPI settings - OPTIONAL --> |{" to "|{")
Line 5: Line 5:
 
|{{#vardefine:app|bfast}}
 
|{{#vardefine:app|bfast}}
 
|{{#vardefine:url|http://sourceforge.net/apps/mediawiki/bfast/index.php?title=Main_Page}}
 
|{{#vardefine:url|http://sourceforge.net/apps/mediawiki/bfast/index.php?title=Main_Page}}
<!--Compiler and MPI settings - OPTIONAL -->
 
 
 
 
|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 
|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 
|{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF-->
 
|{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF-->

Revision as of 18:13, 10 August 2012

Description

bfast website  

BFAST facilitates the fast and accurate mapping of short reads to reference sequences, where mapping billions of short reads with variants is of utmost importance.

Required Modules

modules documentation

Serial

  • bfast

System Variables

  • HPC_{{#uppercase:bfast}}_DIR - installation directory
  • HPC_BFAST_BIN - executable directory
  • HPC_BFAST_DOC - documentation directory