Difference between revisions of "BFAST"
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BFAST facilitates the fast and accurate mapping of short reads to reference sequences, where mapping billions of short reads with variants is of utmost importance. | BFAST facilitates the fast and accurate mapping of short reads to reference sequences, where mapping billions of short reads with variants is of utmost importance. | ||
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Revision as of 01:53, 10 August 2012
Description
BFAST facilitates the fast and accurate mapping of short reads to reference sequences, where mapping billions of short reads with variants is of utmost importance. Template:App Location
Available versions
- 0.7.0a
Running the application using modules
To use bfast with the environment modules system at HPC the following commands are available:
Get module information for bfast:
$module spider bfast
Load the default application module:
$module load bfast
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_BFAST_DIR - directory where bfast is located.
- HPC_BFAST_BIN - executable directory
- HPC_BFAST_DOC - documentation directory