Difference between revisions of "BFAST"
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Moskalenko (talk | contribs) m (Text replace - "<!--Choose sections to enable - OPTIONAL--> |{{#vardefine:mod|1}} <!--Present instructions for running the software with modules -->" to "") |
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|{{#vardefine:app|bfast}} | |{{#vardefine:app|bfast}} | ||
|{{#vardefine:url|http://sourceforge.net/apps/mediawiki/bfast/index.php?title=Main_Page}} | |{{#vardefine:url|http://sourceforge.net/apps/mediawiki/bfast/index.php?title=Main_Page}} | ||
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|{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | |{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | ||
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| − | == | + | ==Environment Modules== |
| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
* HPC_BFAST_BIN - executable directory | * HPC_BFAST_BIN - executable directory | ||
* HPC_BFAST_DOC - documentation directory | * HPC_BFAST_DOC - documentation directory | ||
Latest revision as of 18:16, 12 August 2022
Description
BFAST facilitates the fast and accurate mapping of short reads to reference sequences, where mapping billions of short reads with variants is of utmost importance.
Environment Modules
Run module spider bfast to find out what environment modules are available for this application.
System Variables
- HPC_BFAST_DIR - installation directory
- HPC_BFAST_BIN - executable directory
- HPC_BFAST_DOC - documentation directory