Difference between revisions of "BFAST"
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Moskalenko (talk | contribs) m (Text replace - "<!-- ######## Template Configuration ######## --> <!--Edit definitions of the variables used in template calls Required variables: app - lowercase name of the application e.g. "amber" url - url of the software page (project, company prod) |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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__NOEDITSECTION__ | __NOEDITSECTION__ | ||
[[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] | [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] | ||
| − | + | {|<!--Main settings - REQUIRED--> | |
| − | {| | ||
| − | <!--Main settings - REQUIRED--> | ||
|{{#vardefine:app|bfast}} | |{{#vardefine:app|bfast}} | ||
|{{#vardefine:url|http://sourceforge.net/apps/mediawiki/bfast/index.php?title=Main_Page}} | |{{#vardefine:url|http://sourceforge.net/apps/mediawiki/bfast/index.php?title=Main_Page}} | ||
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|{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | |{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | ||
|{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> | |{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> | ||
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*{{#var:app}} | *{{#var:app}} | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
* HPC_BFAST_BIN - executable directory | * HPC_BFAST_BIN - executable directory | ||
* HPC_BFAST_DOC - documentation directory | * HPC_BFAST_DOC - documentation directory | ||
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WRITE CITATION HERE | WRITE CITATION HERE | ||
|}} | |}} | ||
| + | =Validation= | ||
| + | * Validated 4/5/2018 | ||
Revision as of 21:06, 6 December 2019
Description
BFAST facilitates the fast and accurate mapping of short reads to reference sequences, where mapping billions of short reads with variants is of utmost importance.
Required Modules
Serial
- bfast
System Variables
- HPC_BFAST_DIR - installation directory
- HPC_BFAST_BIN - executable directory
- HPC_BFAST_DOC - documentation directory
Validation
- Validated 4/5/2018