Difference between revisions of "BFAST"
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__NOEDITSECTION__ | __NOEDITSECTION__ | ||
[[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] | [[Category:Software]][[Category:Bioinformatics]][[Category:NGS]] | ||
| − | + | {|<!--Main settings - REQUIRED--> | |
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| − | {| | ||
| − | <!--Main settings - REQUIRED--> | ||
|{{#vardefine:app|bfast}} | |{{#vardefine:app|bfast}} | ||
|{{#vardefine:url|http://sourceforge.net/apps/mediawiki/bfast/index.php?title=Main_Page}} | |{{#vardefine:url|http://sourceforge.net/apps/mediawiki/bfast/index.php?title=Main_Page}} | ||
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|{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | |{{#vardefine:exe|}} <!--Present manual instructions for running the software --> | ||
|{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> | |{{#vardefine:conf|}} <!--Enable config wiki page link - {{#vardefine:conf|1}} = ON/conf|}} = OFF--> | ||
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<!--Description--> | <!--Description--> | ||
{{#if: {{#var: url}}| | {{#if: {{#var: url}}| | ||
| − | {{App_Description|app={{#var:app}}|url={{#var:url}}}}|}} | + | {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}} |
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BFAST facilitates the fast and accurate mapping of short reads to reference sequences, where mapping billions of short reads with variants is of utmost importance. | BFAST facilitates the fast and accurate mapping of short reads to reference sequences, where mapping billions of short reads with variants is of utmost importance. | ||
| − | <!-- | + | |
| − | + | <!--Modules--> | |
| − | == | + | ==Required Modules== |
| − | * | + | [[Modules|modules documentation]] |
| − | + | ===Serial=== | |
| − | + | *{{#var:app}} | |
| − | {{ | + | ==System Variables== |
| + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_BFAST_BIN - executable directory | * HPC_BFAST_BIN - executable directory | ||
* HPC_BFAST_DOC - documentation directory | * HPC_BFAST_DOC - documentation directory | ||
| − | {{#if: {{#var: exe}}|== | + | <!--Additional--> |
| + | {{#if: {{#var: exe}}|==Additional Information== | ||
WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
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{{#if: {{#var: pbs}}|==PBS Script Examples== | {{#if: {{#var: pbs}}|==PBS Script Examples== | ||
See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | ||
| − | {{#if: {{#var: policy}}|==Usage | + | {{#if: {{#var: policy}}|==Usage Policy== |
WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used)|}} | WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used)|}} | ||
{{#if: {{#var: testing}}|==Performance== | {{#if: {{#var: testing}}|==Performance== | ||
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WRITE CITATION HERE | WRITE CITATION HERE | ||
|}} | |}} | ||
| + | =Validation= | ||
| + | * Validated 4/5/2018 | ||
Revision as of 21:06, 6 December 2019
Description
BFAST facilitates the fast and accurate mapping of short reads to reference sequences, where mapping billions of short reads with variants is of utmost importance.
Required Modules
Serial
- bfast
System Variables
- HPC_BFAST_DIR - installation directory
- HPC_BFAST_BIN - executable directory
- HPC_BFAST_DOC - documentation directory
Validation
- Validated 4/5/2018