Difference between revisions of "BEDOPS"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:GenomicsCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|bedops}} |{{#vardefine:url|http://bedo...") |
|||
| Line 78: | Line 78: | ||
<!--Turn the Table of Contents and Edit paragraph links ON/OFF--> | <!--Turn the Table of Contents and Edit paragraph links ON/OFF--> | ||
__NOTOC____NOEDITSECTION__ | __NOTOC____NOEDITSECTION__ | ||
| + | =Validation= | ||
| + | * Validated 4/5/2018 | ||
Revision as of 19:32, 5 April 2018
Description
BEDOPS is an open-source command-line toolkit that performs highly efficient and scalable Boolean and other set operations, statistical calculations, archiving, conversion and other management of genomic data of arbitrary scale. Tasks can be easily split by chromosome for distributing whole-genome analyses across a computational cluster.
You can read more about BEDOPS and how it can be useful for your research in the Overview documentation, as well as in the original manuscript.
Required Modules
Serial
- bedops
System Variables
- HPC_{{#uppercase:bedops}}_DIR - installation directory
Validation
- Validated 4/5/2018