BALI-PHY SLURM

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Serial Submission Script

The following job script runs bali-phy on a single processor.

#!/bin/bash
#SBATCH --job-name=<JOBNAME>
#SBATCH --mail-user=<EMAIL>
#SBATCH --mail-type=FAIL,END
#SBATCH --output <my_job-%j.out>
#SBATCH --error <my_job-%j.err>
#SBATCH --nodes=1
#SBATCH --ntasks=1
#SBATCH --mem-per-cpu=2G
#SBATCH --time=01:00:00
#SBATCH --account=<GROUP>
#SBATCH --array=<BEGIN-END>

module load gcc/5.2.0 bali-phy

echo $PBS_O_WORKDIR
cd $PBS_O_WORKDIR

bali-phy sequence-file