Applications
Revision as of 15:05, 21 September 2017 by Moskalenko (talk | contribs)
- Last updated on 2017-09-21.
- Up to three latest versions are listed. The default is shown in bold if it's not the latest version.
- See output of 'module spider module_name' for a full list of provided versions.
| Name | Versions | Website | Categories |
|---|---|---|---|
| 3d-dna | 20170330 | ||
| 3PCLR | 20150906 | ||
| 4p | 1.0 | ||
| AAFTF | 0.2.5 | ||
| ABRicate | 1.0.1 | ||
| ABruijn | 1.0 | ||
| ABySS | 1.5.2, 2.1.0, 2.2.5 | ||
| AdapterRemoval | 2.2.2 | ||
| ADFRsuite | 1.0 | ||
| ADMB | 11.5, 12.0 | ||
| AdmixTools | 20150311, 7.0.2 | ||
| ADMIXTURE | 1.23, 1.3.0 | ||
| AEGeAn | 0.14.0, 0.16.0 | ||
| AFNI | 20.3.00, 2018_04_12 | ||
| AfterQC | 0.9.7 | ||
| AGAT | 0.4.0 | ||
| AGfusion | 1.252 | ||
| Albacore | 2.3.1, 2.3.3 | ||
| Albumentations | 1.0.3 | ||
| Alder | 1.03 | ||
| ALFA | 1.1.1 | ||
| alienhunter | 1.7 | ||
| AliStat | 1.12 | ||
| allhic | 0.9.8 | ||
| ALLMAPS | 20180117 | ||
| ALLPATHS-LG | 42316, 44837, 49232 | ||
| AlphaFold | 2.0.0, 2.1.2, 2.2.0 | ||
| Alphaimpute | 0.0.2, 1.9.8.2, 1.9.8.3 | ||
| AltAnalyze | 2.1.0 | ||
| AMAS | 1.0 | ||
| AMBER | 16.0, 18, 20 | ||
| AMICO | 1.0.1 | ||
| AMOS | 3.1.0 | ||
| AMP | 0.6.1 | ||
| amPEPpy | 1.0 | ||
| amphora2 | 20140305 | ||
| AMPtk | 1.2.4, 1.5.1 | ||
| amptorch | 20210313 | ||
| amrfinderplus | 3.10.18 | ||
| AMRPlusPlus | 20180508 | ||
| AMUSE | 10.0, 13.1.0 | ||
| ANGSD | 0.933 | ||
| annocript | 2.0 | ||
| AnnoTALE | 1.4.1 | ||
| ANNOVAR | 20130221, 20150322, 20191024 | ||
| Ansible | 2.5.5, 2.8.1 | ||
| ansysem | 17.0, 2022r1 | ||
| antiSMASH | 4.1.0, 6.0.1 | ||
| ANTs | 2.2.0, 2.3.4 | ||
| anvio | 6.1, 6.2, 7.1 | ||
| Appreci8 | 20180530 | ||
| Apptainer | 1.0.3 | ||
| APT | 1.15.0, 1.18.0, 1.20.5 | ||
| ARC | 1.1.4 | ||
| Aria2 | 1.35.0 | ||
| ARKS | 1.0.2 | ||
| Armadillo | 7.900.0, 9.200.6, 9.900.4 | ||
| ARPACK | 1.0 | ||
| ArrayFire | 3.4.2 | ||
| arriba | 2.1.0 | ||
| ART | 20160417, 20160605 | ||
| artemis | 18.1.0 | ||
| asap | 2.0 | ||
| asaq | 1.0 | ||
| ASE-ANI | 20180712 | ||
| ASHS | 2.0 | ||
| ASPECT | 2.3.0 | ||
| Assembly-stats | 1.0.1 | ||
| Assemblytics | 1.2.1 | ||
| Assexon | 20190814 | ||
| AStalavista | 3.2, 4.0 | ||
| aster | 220718 | ||
| ASTRAL | 5.6.1, 5.6.2, 5.7.7 | ||
| ASTRID | 2.2.1 | ||
| Astropy | 2.0.8 | ||
| ATAT | 3.23, 3.34 | ||
| ATLAS | 3.10.1, 3.10.2, 3.11.17 | ||
| Atom | 1.57.0 | ||
| AtomEye | 3 | ||
| AtomMan | 1.3.3 | ||
| aTRAM | 2.2.0, 2.4.3 | ||
| Augustus | 3.3.2, 3.3.3, 3.4.0 | ||
| Auto3DEM | 4.05.2 | ||
| AutoDock | 4.2.6 | ||
| AutoDock-GPU | 1.5.3 | ||
| Autometa | 20190802 | ||
| automlsa2 | 0.8.1 | ||
| AWSCLI | 2.2.30 | ||
| azoo | 1.3.1 | ||
| Badread | 0.1.5 | ||
| bakta | 1.3.3 | ||
| BALi-Phy | 3.4.1, 3.5.0 | ||
| BAM-matcher | 20161021 | ||
| Bam-Readcount | 20150616 | ||
| bamaddrg | 20120326 | ||
| BamBam | 1.0 | ||
| bamm | 2.5.0 | ||
| bamsnap | 0.2.19 | ||
| Bamstats | 20140602 | ||
| Bamsurgeon | 1.2 | ||
| bamtofastq | 1.3.5 | ||
| Bamtools | 2.4.1, 2.5.0, 2.5.1 | ||
| bamUtil | 1.0.2 | ||
| BAPS | 6.0 | ||
| Barrnap | 0.7, 0.9 | ||
| Basemount | 0.15.96 | ||
| BatMeth2 | 20210720 | ||
| bax2bam | 0.0.9 | ||
| BayArea | 1.0.2 | ||
| BAYENV | 2.0 | ||
| BayesAss | 3.0.4, 3.0.4.2 | ||
| BayeScan | 2.1 | ||
| BayesR | 20151016 | ||
| BayesTraits | 3.0.2 | ||
| baypass | 2.1 | ||
| BBMap | 38.26, 38.44, 38.90 | ||
| bcftools | 1.15, 1.3.1, 1.9 | ||
| bcl2fastq | 2.16.0.10, 2.20.0.422 | ||
| BDG-SeQuila | 0.5.5 | ||
| BEAGLE | 4.1, 5.0, 5.2 | ||
| BEAR | 20170209 | ||
| BEAST | 2.6.2, 2.6.3, 2.6.7 | ||
| BEAST2-XML | 1.0.9 | ||
| BEDOPS | 2.4.30 | ||
| BEDTools | 2.29.1, 2.29.2, 2.30.0 | ||
| Bertini | 1.6 | ||
| BERTopic | 0.7, 0.8.1 | ||
| BESST | 2.2.4 | ||
| BFAST | 0.7.0 | ||
| bgenix | 1.1.7 | ||
| Bifrost | 0.2, 1.0.3, 20200225 | ||
| BiG-SCAPE | 1.1.2 | ||
| BinPacker | 1.0 | ||
| BinSanity | 0.2.6.4 | ||
| Bioawk | 1.0 | ||
| bioBakery | 0.15.1, 1.8, 3.0.0 | ||
| Biodiverse | 2.1 | ||
| Biolite | 0.3.5.1 | ||
| BIOM | 2.1.5, 2.1.6 | ||
| BIOMART | 1.4 | ||
| Biopieces | 2.0 | ||
| BIRDS | 1.0 | ||
| Bismark | 0.22.3, 0.7.4, 0.7.7 | ||
| Blackfynn | 0.2.7 | ||
| BLASR | 20130815, 20161215 (5.3), 5.3.2 | ||
| Blast2GO | 2.5.0-20120705 | ||
| Blast2GO CLI | 1.3.3 | ||
| BLAT | 20121105, 20140318 | ||
| blender | 2.73, 2.77, 3.0.1 | ||
| blink | 0.01 | ||
| Blitz | 0.10 | ||
| BlobTools | 1.0, 2.2 | ||
| bloomfiltertrie | 0.8.7 | ||
| BloomTree | 0.3.5 | ||
| BLUPF90 | 20160604, 20180301, 20190531 | ||
| BMGE | 1.12 | ||
| bmtagger | 3.101 | ||
| BOLT-LMM | 2.3.4 | ||
| BoltzTraP | 1.2.5 | ||
| Boost | 1.71.0, 1.75.0, 1.77.0 | ||
| booster | 0.1.2 | ||
| Bowtie | 1.1.1, 1.2.0, 1.2.3 | ||
| Bowtie2 | 2.3.5.1, 2.4.2, 2.4.5 | ||
| BoxCLI | 2.9.0 | ||
| BPGA | 1.2 | ||
| BPP | 4.1.4, 4.3.8, 4.4.1 | ||
| Bracken | 1.0.0, 2.5 | ||
| BrainIAK | 0.11 | ||
| braker | 2.1.2, 2.1.5, 2.1.6 | ||
| BRANCH | 1.8.1 | ||
| BRATNextGen | 20150505 | ||
| BreakDancer | 1.4.5 | ||
| breakseq | 2.2 | ||
| Brewery | 20191205 | ||
| Bridger | 20141201 | ||
| BRIG | 0.95 | ||
| BRM | 0.3 | ||
| Bruker2nifti | 1.0.4 | ||
| Bsmap | 2.87 | ||
| Bsoft | 1.9.1 | ||
| BSseeker2 | 2.1.0, 2.1.8 | ||
| bubbleparse | 20140314 | ||
| BUCKy | 1.4.4 | ||
| BUSCO | 4.0.6, 4.1.4, 5.2.0 | ||
| BWA | 0.7.7, 0.7.8, 0.7.9a | ||
| bwa-mem2 | 2.2.1 | ||
| BWA-PSSM | 0.5.11 | ||
| bxh_xcede_tools | 1.11.1 | ||
| BYOBU | 5.133, 5.92 | ||
| bzip2 | 1.0.6 | ||
| c-wap | 20220624 | ||
| Cactus | 2.0.3, 2.0.5 | ||
| CAFE | 4.1, 5.0.0 | ||
| came | 0.0.1 | ||
| Camino | 20140723 | ||
| CAMP | 1.0.0 | ||
| Cantera | 2.1.1 | ||
| Canu | 1.9, 2.0, 2.1 | ||
| CANVAS | 1.40.0.1613 | ||
| CAP3 | 20120705 | ||
| Capnp | 0.5.3 | ||
| CARTA | 2.0 | ||
| CASAVA | 1.8.2 | ||
| CASM | 0.2.0 | ||
| CasOFFinder | 2.4 | ||
| Catch | 1.4.0 | ||
| CAVIAR | 20171218 | ||
| CBGpipe | 20190702 | ||
| CCMetagen | 1.4.0 | ||
| CD-HIT | 4.6, 4.6.4, 4.6.8 | ||
| CDBFasta | 20181005 | ||
| CDNA_Cupcake | 20180629, 22.0.0, 9.0.1 | ||
| CDO | 1.7.2rc3, 1.9.4 | ||
| CellProfiler | 3.1.9, 4.1.3 | ||
| CellRanger | 6.0.1, 6.1.2, 7.0.0 | ||
| CellRanger-ARC | 2.0.1 | ||
| CellRanger-ATAC | 1.2.0 | ||
| CellRanger-DNA | 1.0.0, 1.1.0 | ||
| Centrifuge | 1.0.3, 1.0.4b | ||
| CFITSIO | 3.370 | ||
| CGAL | 4.10, 4.9, 5.02 | ||
| CGATools | 1.6.0.43 | ||
| cgmaptools | 0.1.1, 0.1.2 | ||
| CGView | 1.0.2 | ||
| CHARMM | 36a3, 43b2 | ||
| ChartDirector | 5.1.0 | ||
| CheckM | 1.0.4, 1.0.7, 1.1.2 | ||
| Chimera | 1.12 | ||
| Chipyard | 1.0 | ||
| Chromeister | 1.5a | ||
| ChromEvol | 2.0 | ||
| CIMS | 4.1.2 | ||
| CIRCexplorer | 1.1.10 | ||
| CIRCexplorer2 | 2.3.5, 2.3.8 | ||
| Circlator | 1.5.5 | ||
| Circleator | 1.0.2 | ||
| circompara2 | 0.1.2.1 | ||
| Circos | 0.63-pre11, 0.69-2, 0.69-9 | ||
| CIRI | 2.0.6 | ||
| ciriquant | 1.1.2 | ||
| CisGenome | 2.0 | ||
| cisTEM | 1.0.0 | ||
| Clairvoyante | 1.02 | ||
| Clann | 3.2.3 | ||
| clara | v4.0 | ||
| CLARK | 1.2.2-b, 1.2.3 | ||
| CLHEP | 2.2.0.1 | ||
| CLIFinder | 4.1 | ||
| ClinicaDL | 1.0.4 | ||
| clipkit | 1.3.0 | ||
| CLIPper | 2.1.0 | ||
| CLIPSeqTools | 0.1.7 | ||
| ClonalFrame | 1.1, 1.2 | ||
| ClonalFrameML | 1.0, 1.11 | ||
| CloudCompare | 2.10.3 | ||
| Clover | 2.0 | ||
| CLUMPP | 1.1.2 | ||
| ClustalO | 1.2.0 | ||
| ClustalW | 2.1 | ||
| cluster3 | 1.52a | ||
| Clview | 20130402 | ||
| CMake | 3.19.1, 3.21.3 | ||
| CMS | 20170518 | ||
| CMWP | 140518 | ||
| CNCI | 20180305 | ||
| CNSpipeline | 20170827 | ||
| CNV-Seq | 20110715, 20140812 | ||
| CNV-Sim | 0.9.2 | ||
| CNVkit | 0.9.6 | ||
| CNVnator | 0.3.2 | ||
| cobra-tf | 0.1 | ||
| CodonPhyML | 20150303 | ||
| Coevol | 1.3c, 1.4b, 1.6 | ||
| Cogent | 2.1 | ||
| COLMAP | 3.6 | ||
| CoMap | 1.4.1 | ||
| Comp-D_MPI | 1.0 | ||
| Compacta | 1.02 | ||
| COMSOL | 5.4.0 | ||
| Concaterpillar | 1.8a | ||
| CONCOCT | 1.1.0 | ||
| Conda | 4.10.3, 4.12.0 | ||
| CONN | 18a | ||
| CONNECT | 20200614 | ||
| connectomemapper3 | 3.0.0-rc1 | ||
| ConPADE | 1.0 | ||
| Conpair | 20161010, 20180624 | ||
| Consed | 23.0, 25.0, 29.0 | ||
| CONSEL | 0.20 | ||
| ContaVect | 0.2 | ||
| Convert3D | 1.1.0 | ||
| Coot | 0.9.5 | ||
| Coreutils | 8.23, 8.28 | ||
| Corset | 1.06 | ||
| Counterr | 0.1 | ||
| covNMR | 2014 | ||
| cp2k | 7.0.0 | ||
| CPAT | 3.0.2 | ||
| cpc | 2.0 | ||
| CPLEX | 12.6.1, 12.6.2, 12.7 | ||
| Crass | 1.0.1 | ||
| crisflash | 1.2.0 | ||
| CRISP | 20181122 | ||
| CRISPRanalyzer | 1.50 | ||
| CRISPRCasFinder | 4.2.17 | ||
| CRISPResso2 | 20220811 | ||
| CrossMap | 0.3.9, 0.6.3 | ||
| crossmapper | 1.1.1 | ||
| Crux | 1.40 | ||
| CryptoMiniSat | 5.0.1 | ||
| csvtk | 0.23.0 | ||
| ctk | 1.1.4 | ||
| CUBE | 4.4 | ||
| CUDA | 11.0.207, 11.1.0, 11.4.3 | ||
| Cufflinks | 2.1.1, 2.2.1, 2.2.1.1 | ||
| cupy | 8.3.0 | ||
| cutadapt | 1.18, 2.8, 3.4 | ||
| CutRunTools | 20200104 | ||
| cvbio | 3.0.0 | ||
| CViT | 1.3 | ||
| CWLtool | 1.0.20190906, 2.0.20200126, 3.0.20210124104916 | ||
| cx_oracle | 8.3.0 | ||
| CycleGan | 20201015 | ||
| Cytoscape | 3.4.0 | ||
| d2go | 20210702 | ||
| dadi | 2.1.1 | ||
| DAKOTA | 6.15, 6.8, 6.8-gui | ||
| DALIGNER | 1.0 | ||
| dammit | 1.0rc2 | ||
| DASTool | 1.1.0, 1.1.2 | ||
| datamash | 1.1.0 | ||
| DAWGPAWS | 1.0 | ||
| DCC | 0.4.4 | ||
| Dcmstack | 0.6.2 | ||
| DCMTK | 3.6.0 | ||
| dDocent | 2.7.8 | ||
| DDSCAT | 7.3.0 | ||
| DDT | 18.2, 20.0, 20.2 | ||
| DealII | 8.3.0, 9.3.1 | ||
| DeconSeq | 0.4.3 | ||
| decontaMiner | 1.4 | ||
| DECX | 20180205 | ||
| DeepARG | 1.0.1 | ||
| deepbgc | 0.1.18 | ||
| Deepcoil | 2.0.1 | ||
| DeepGS | 1.2 | ||
| DeepLabCut | 2.0.7-gpu, 2.1.1, 2.2.1 | ||
| deepmicrobes | 20200219 | ||
| DeepMReye | 01192022 | ||
| DeepPicker | 20161102 | ||
| deepTools | 2.4.3, 3.1.1 | ||
| deepvariant | 1.4.0 | ||
| deFusion | 20200305 | ||
| Delft3D | 7545 | ||
| Delineate | 1.2.2 | ||
| Delly | 0.7.5, 0.7.7, 0.7.8 | ||
| delucs | 20220512 | ||
| DeNoGAP | 1.0 | ||
| DERIVA | 1.5.0 | ||
| deSALT | 1.5.6 | ||
| Detectron2 | 0.4, 0.5, 0.6 | ||
| DeTiN | 1.7.5.9 | ||
| DEXTRACTOR | 1.0 | ||
| Diamond | 0.9.15, 0.9.34, 2.0.9 | ||
| diCal2 | 2.2.0.1 | ||
| diffReps | 1.55.4 | ||
| DISCOVAR de novo | 52488 | ||
| DiscoVista | 20180906 | ||
| discvrseq | 1.3.10 | ||
| Distruct | 2.3 | ||
| DIYABC | 1.0.4.43b, 2.0.3, 2.1.0 | ||
| DL_POLY | 1.9 | ||
| Dlib | 19.19 | ||
| DNA Clust | 3.0 | ||
| DOCK | 6.7, 6.8, 6.9 | ||
| DoGFinder | 20201103 | ||
| DosageConvertor | 1.0.3 | ||
| DOT | 2.0 | ||
| Doxygen | 1.8.3.1 | ||
| dragmap | 1.2.1 | ||
| dragonflye | 1.0.12 | ||
| DRAP | 1.91 | ||
| dRep | 2.3.2 | ||
| Dropseq | 2.4.0 | ||
| DS9 | 7.5, 8.0.1 | ||
| DScribe | 1.2.0 | ||
| dsistudio | 20210123 | ||
| DSK | 2.1.0, 2.3.0 | ||
| DSRC | 2.0 | ||
| DSSAT | 4.6 | ||
| DSSP | 2.2.1, 3.0.0 | ||
| DSuite | 0.4, 0.4-r41 | ||
| dtiprep | 0.1.1 | ||
| duchamp | 1.6.2 | ||
| dynamicDBG | 20181003 | ||
| Dynare | 4.4.3 | ||
| ea-utils | 1.04.807.18, 1.1.2.537 | ||
| EAGLE | 2.0 | ||
| eagle-rc | 1.1.1 | ||
| ECE | 1.2 | ||
| EDirect | 10.7, 12.2 | ||
| EDTA | 1.9.6 | ||
| Edyeet | 0.1, 0.3 | ||
| EEGLAB | 12.0.2.1b, 13.2.2b, 13.4.4b | ||
| eGene-MVN | 0.1 | ||
| eggNOG-mapper | 2.0.1, 2.1.6 | ||
| EGSnrc | 2019 | ||
| EIGENSOFT | 4.2, 5.0.1, 6.0.1 | ||
| Elastix | 4.9.0 | ||
| ELPA | 2019.11.001 | ||
| elPrep | 4.1.4 | ||
| Emacs | 27.2 | ||
| EMAN2 | 2.22, 2.31 | ||
| EMBOSS | 6.6.0 | ||
| Embree | 3.6.1 | ||
| EMC | 9.4.3 | ||
| EMMAX | 20100307, 20120210 | ||
| EnergyPlus | 9.3.0 | ||
| Ensembl Tools | 100, 80 | ||
| enTAP | 0.6.1.2, 20160416 | ||
| EPACTS | 3.2.6, 3.4.2, 3.4.2.hg38 | ||
| EpiNano | 1.2.0 | ||
| epiteome | 1.0 | ||
| epoch | 4.7.3 | ||
| eQTLA | 1.1 | ||
| eQtlBma | 1.2.2, 1.3.0r20140820 | ||
| Erpin | 5.5.4 | ||
| ESOM | 1.1 | ||
| ESPRESSO | 6.2.1, 6.4.1, 7.0 | ||
| ESPRIT | 2009-nogap, 201102 | ||
| ETE3 | 3.0.0, 3.1.1 | ||
| EVidenceModeler | 1.1.1 | ||
| Evigene | 20180730, 20200520 | ||
| EvoLSTM | 20220103 | ||
| ExaBayes | 1.5 | ||
| Exonerate | 2.2.0 | ||
| ExpansionHunter | 4.0.2 | ||
| ExpansionHunterDenovo | 0.9.0 | ||
| export2graphlan | 0.22 | ||
| eXpress | 1.3.1, 1.5.1 | ||
| ezaai | 1.0 | ||
| face_morpher | 20190630 | ||
| face_recognition | 1.2.2 | ||
| fairseq | 0.12.2 | ||
| FALCON | 20161027, 20161222, 20190601 | ||
| FALCON_unzip | 20161222 | ||
| FAR | 2.15 | ||
| FAST | 1.06 | ||
| fast-gep | 1.0 | ||
| Fast-Plast | 1.2.6 | ||
| fast5tools | 0.3.1 | ||
| FASTA | 34.26.5, 36.3.6d | ||
| fastai | 2.1.5, 2.6.3 | ||
| FastANI | 1.1 | ||
| fastchaos | 0.1.0 | ||
| FastGEAR | 20161216 | ||
| Fastix | 0.1.0 | ||
| FastML | 3.0 | ||
| Fastp | 0.20.0, 0.22.0 | ||
| FASTphase | 1.4.8 | ||
| FastPlast | 1.2.8 | ||
| fastq-pair | 1.0 | ||
| FastQ-Screen | 0.14.0 | ||
| Fastq-tools | 0.8 | ||
| FastQC | 0.11.4, 0.11.7, 0.9.6 | ||
| FastqPuri | 1.0.7 | ||
| FastQTL | 2.184 | ||
| FASTRAL-constrained | 20211108 | ||
| fastsimcoal | 2.6.0.3, 2.7.0.2 | ||
| FastSpar | 0.0.4 | ||
| fastStructure | 20150112 | ||
| FastTree | 2.1.11 | ||
| FastUniq | 1.1 | ||
| Fastx Toolkit | 0.0.13.2, 0.0.14 | ||
| fcGENE | 1.0.7, 1.0.7.1 | ||
| FDSTools | 1.2.0 | ||
| fdupes | 1.51 | ||
| FEELnc | 0.1.1 | ||
| FEniCS | 2018.1.0 | ||
| Ferret | 6.82 | ||
| FFmpeg | 2.1.3, 2.8.3, 4.3.1 | ||
| FFTW | 3.3.6, 3.3.7, 3.3.8 | ||
| fgbio | 0.5.0, 0.7.0 | ||
| FGMP | 1.0.1 | ||
| FIGARO | 1.1.2 | ||
| Fiji | 2.0.0rc59 | ||
| Filtlong | 0.2.0 | ||
| Finder | 20210503, 20210609 | ||
| finemap | 1.4 | ||
| fineRADstructure | 0.3.2 | ||
| finesse | 2.3.1 | ||
| fit-sne | 1.2.1 | ||
| FLAIR | 1.5 | ||
| flairNLP | 0.10 | ||
| flappie | 1.1.0, 2.1.3 | ||
| FLASh | 1.2.10, 1.2.11 | ||
| FLEA | 2.0.0 | ||
| flex | 2.6.4 | ||
| Flexbar | 2.3, 2.34, 3.5.0 | ||
| FLEXLm | 1.0 | ||
| FlowCraft | 1.4.1 | ||
| Fluent | 17.2, 19.1, 2020R1 | ||
| Flye | 2.7.1, 2.8.1, 2.9 | ||
| fMRIPrep | 1.4.0a1, 1.5.4, 20.2.3 | ||
| ForeSeqs | 1.0.4 | ||
| fpocket | 4.0.2 | ||
| fqtools | 20160224 | ||
| FragGeneScan | 1.16 | ||
| FRAMA | 20151019 | ||
| FrameDP | 1.2.2 | ||
| FRAPOSA | 20200421 | ||
| FreeBayes | 1.1.0-20170823, 1.3.1, 1.3.2 | ||
| freesasa | 2.1.2 | ||
| Freesurfer | 7.1.0, 7.1.1, 7.2.0 | ||
| Freyja | 1.3.1, 1.3.4, 1.3.8 | ||
| FSA | 1.15.9 | ||
| FSL | 6.0.3, 6.0.4, 6.0.5 | ||
| fslmrs | 1.1.10 | ||
| funannotate | 1.8.7, 1.8.9 | ||
| fusion_twas | 20210218 | ||
| GAL | 20180906 | ||
| Galaxy | 1.0 | ||
| GAML | 20150610 | ||
| GapCloser | 1.12r6 | ||
| GapFiller | 1.10, 1.11 | ||
| GARLI | 2.0, 2.01 | ||
| GASVPro | 201310 | ||
| GATE | 7.0 | ||
| GATK | 4.1.4.0, 4.1.8.1, 4.1.9.0 | ||
| Gaussian | 09 D.01, 16, 16-c02 | ||
| Gawk | 4.2.0 | ||
| Gblocks | 0.91b | ||
| GCC | 7.3.0, 8.2.0, 9.3.0 | ||
| GCE | 1.0.2, 4.0 | ||
| GCT | 6.2.1 | ||
| GCTA | 1.26.0, 1.92.4beta, 1.93.2beta | ||
| GDAL | 2.2.1, 2.2.4, 2.3.1 | ||
| GDB | 8.3, 9.2 | ||
| GDC-Client | 1.0.1, 1.5.0 | ||
| GDrive | 2.1.0 | ||
| GDSL | 1.18 | ||
| Geant4 | 4.10, 4.10.03, 4.10.5 | ||
| GEM | 20130406 | ||
| gem5 | 2.0 | ||
| GEMMA | 0.98.1 | ||
| GeneMark-ES | 4.65, 4.68, 4.69 | ||
| GeneMarkS | 2012.04 | ||
| GeneMarkS-T | 3.10.001 | ||
| GenePainter | 2.0.4 | ||
| GeneRax | 1.2.2 | ||
| Generic Mapping Tools | 6.4.0 | ||
| GeneSeqer | 2014-02-26 | ||
| genesum | 0.1.0 | ||
| GeneTorrent | 3.8.7 | ||
| GenGen | 1.0.1 | ||
| Genome STRiP | 2.00.1602 | ||
| Genome_Graph_Annotation | 20190131 | ||
| GenomeScope2 | 2.0 | ||
| GenomeThreader | 1.7.3 | ||
| GenomeTools | 1.5.7, 1.5.9 | ||
| genomic-fluidity | 20151109 | ||
| GenomicConsensus | 2.3.3 | ||
| GenomicNeuralnet | 20161030 | ||
| GenomicTools | 2.7.0 | ||
| GenotypeHarmonizer | 1.4.18 | ||
| Genrich | 0.5 | ||
| GenSel | 4.90 | ||
| geopython | 1.0.0, 1.0.1 | ||
| GEOS | 3.3.8, 3.6.2 | ||
| GeP | 2.1 | ||
| gepard | 1.40.0 | ||
| Gerbil | 1.11 | ||
| get_homologues | 3.3.3 | ||
| GetOrganelle | 1.7.3.5, 1.7.5.0 | ||
| GFam | 1.1 | ||
| GFF-Ex | 2.3 | ||
| GFF3toolkit | 2.0.3 | ||
| gffcompare | 0.12.2 | ||
| gffread | 0.11.8, 0.12.7, 0.9.8c | ||
| Gflags | 2.2.1, 20150520 | ||
| GFOLD | 1.1.4 | ||
| ggsashimi | 0.5.0 | ||
| GHOST-MP | 1.3.4 | ||
| Ghostscript | 9.22 | ||
| Giotto | 0.1.0 | ||
| Git | 2.14.1, 2.30.1 | ||
| git-filter-repo | 2.33.0 | ||
| glactools | 1.0.8 | ||
| Glimmer | 3.02 | ||
| GlimmerHMM | 3.0.4 | ||
| GLMsingle | 1.0 | ||
| Globus | 1.10.1, 2.1.3 | ||
| glog | 0.3.5 | ||
| GLPK | 4.55, 4.65 | ||
| Glueviz | 0.15.2 | ||
| GMAP | 20180212, 20180212_sse2, 20190610 | ||
| GMcloser | 1.6 | ||
| GMP | 6.1.2 | ||
| GnuPlot | 5.2.2, 5.2.3, 5.4.1 | ||
| Go | 1.13.6, 1.15.4, 1.18.3 | ||
| GOMAP | 1.3 | ||
| GoPHY | 201030 | ||
| gotcloud | 1.17.5 | ||
| GPA | 1.1 | ||
| GPhoCS | 1.2.3 | ||
| Gpufit | 20201127 | ||
| Grace | 5.1.22 | ||
| GRACKLE | 3.1 | ||
| GrADS | 2.0.1 | ||
| Graftm | 0.12.2 | ||
| GramCluster | 1.3 | ||
| graph-tool | 2.32 | ||
| Graph_annotation | 0.1 | ||
| GraPhlAn | 1.1.3 | ||
| GraphMap2 | 0.6.5 | ||
| GraphSplitting | 2.4 | ||
| graphtyper | 2.7.2 | ||
| GraphViz | 2.38.0, 2.46.1 | ||
| GRASS | 7.0, 7.4 | ||
| grf | 1.0.0 | ||
| Grib_api | 1.10.1, 1.15.1, 1.26.1 | ||
| GRIDSS | 2.6.2 | ||
| GROCSVs | 0.2.5 | ||
| GROMACS | 2021.2, 2021.3, 2021.4 | ||
| GroopM | 0.3.5 | ||
| Groovy | 2.4.15 | ||
| Gscripts | 1.1 | ||
| GSEA | 3.0.0, 4.2.2 | ||
| GSL | 2.4, 2.5, 2.6 | ||
| GSNP | 1.0 | ||
| GTAHunter | 20200106 | ||
| GTDBTk | 1.7.0, 2.0.0, 2.1.0 | ||
| GTOOL | 0.7.5 | ||
| GUAVA | 1.0 | ||
| Gubbins | 2.4.1, 3.2.1 | ||
| guideseq | 1.0.2 | ||
| guile | 2.2.2 | ||
| GULP | 4.4, 5.0 | ||
| guppy | 4.4.1, 4.5.4, 6.1.7 | ||
| Gurobi | 9.5.1 | ||
| GWAMA | 2.2.2 | ||
| Gzip | 1.10 | ||
| Hail | 0.2.77 | ||
| hal | 2.1 | ||
| HALC | 1.1 | ||
| halla | 0.8.17 | ||
| HaMStR | 13.2.3, 13.2.4, v8b | ||
| hapbin | 1.3.0 | ||
| HapCompass | 0.7.7 | ||
| HAPCUT | 0.7 | ||
| HapCUT2 | 1.3.3 | ||
| hapdup | 0.6 | ||
| Haploflow | 0.1 | ||
| Haplomerger2 | 20180603 | ||
| HAPLOSWEEP | 1.0 | ||
| happy | 0.3.14 | ||
| hapQTL | 1.00 | ||
| hapsembler | 2.21 | ||
| HASLR | 0.8a1 | ||
| hclust2 | 1.0.0 | ||
| HDF4 | 4.2.11 | ||
| HDF5 | 1.8.19, 1.8.20, 1.8.9 | ||
| hecaton | 0.5.1 | ||
| HELEN | 20200516 | ||
| HelitronScanner | 1.1 | ||
| hgraph2graph | 20210428 | ||
| HiC-Pro | 3.0.0 | ||
| Hifiasm | 0.16.1, 0.4, 0.8 | ||
| HipSTR | 0.7 | ||
| HISAT2 | 2.2.0, 2.2.1, 2.2.1-3n | ||
| HLAminer | 1.3.1, 1.4 | ||
| HMM-FRAME | 20140724 | ||
| HmmCleaner | 0.180750 | ||
| HMMER | 3.1b1, 3.1b2, 3.2.1 | ||
| hmmer2go | 0.18.1 | ||
| HMMRATAC | 1.2.10 | ||
| HOMER | 4.10, 4.11, 4.8 | ||
| homopolish | 0.3.3 | ||
| HOOMD | 2.1.7 | ||
| HPL | 2.1 | ||
| HTMLDoc | 1.8.28, 1.9.3 | ||
| HTSeq | 0.11.2 | ||
| HUMAnN | 2.8.1 | ||
| humann2 | 0.11.2, 2.8.1 | ||
| hyb | 20141126, 20200815 | ||
| HybPiper | 1.2, 1.3.1, 2.0.1 | ||
| HyDe | 0.4.3 | ||
| HyPhy | 2.5.4, 2.5.7, 2.5.8 | ||
| HYPRE | 2.15.1, 2.18.2, 2.19.0 | ||
| iAnnotateSV | 1.0.6, 1.0.9 | ||
| iAssembler | 1.3.2 | ||
| ibdne | 20150815 | ||
| icommands | 3.3.1 | ||
| IDBA-MT | 1.0 | ||
| IDBA-UD | 1.1.1, 1.1.1-512, 1.1.1-512-mem | ||
| IDL | 8.3 | ||
| IDR | 2.0.3 | ||
| IGB | 8.4.1 | ||
| igBLAST | 1.5.0, 1.7.0 | ||
| IGoR | 1.4.0 | ||
| iGTP | 1.1 | ||
| IGV | 2.3.91, 2.4.16, 2.8.6 | ||
| illumina-utils | 2.11 | ||
| Illumiprocessor | 2.0.9 | ||
| IM and IMa | 20091217 | ||
| Ima2 | 20120827 | ||
| IMa2p | 20170712 | ||
| IMA3 | 22Aug18 | ||
| ImageJ | 1.48 | ||
| ImageMagick | 7.0.8-20 | ||
| Imaginaire | 20201229 | ||
| IMOD | 4.7.15, 4.9.10 | ||
| imoka | 1.0 | ||
| IMPUTE2 | 2.3.2 | ||
| IMPUTE5 | 1.1.5 | ||
| INDELible | 1.03 | ||
| Infernal | 1.1.1, 1.1.4 | ||
| INLA | 20160718, 20170620 | ||
| InParanoid | 4.1 | ||
| Inspector | 1.0.2 | ||
| InStruct | 20160723 | ||
| Intel Compilers and Libraries | 2018.1.163, 2019.1.144, 2020.0.166 | ||
| Intel MPI | 5.1.1 | ||
| InterProScan | 5.54-87.0, 5.56-89.0, 5.57 | ||
| intervene | 0.6.2 | ||
| IOAPI | 3.1, 3.2 | ||
| IPOPT | 3.12.10, 3.12.6 | ||
| ipyrad | 0.7.24, 0.7.30, 0.9.53 | ||
| IQ-TREE | 2.1.0, 2.1.2, 2.1.3 | ||
| IRAP | 0.8.1p7 | ||
| irep | 1.10 | ||
| IRFinder | 1.2.0, 1.3.0, 1.3.1 | ||
| isONclust | 0.0.6 | ||
| IsoSel | 1.0 | ||
| IsoSeq3 | 3.2.2, 3.4.0, 3.7.0 | ||
| ISOWN | 20180820 | ||
| isPcr | 3.3 | ||
| ITK | 3.20.1, 4.10.1 | ||
| ITK-SNAP | 3.0.0, 3.8.0 | ||
| ITSx | 1.1b | ||
| IVA | 1.0.11 | ||
| iVar | 1.3.1 | ||
| Jabba | 1.0 | ||
| JACUSA | 1.2.0 | ||
| JAGS | 3.3.0, 3.4.0, 4.2.0 | ||
| Jasmine | 1.1.4 | ||
| jasp | 0.14.3 | ||
| jbrowse2 | 1.7.4 | ||
| JCVI | 0.8.12, 1.0.13, 1.2.10 | ||
| JDK | 11.0.1, 14, 9.0.1 | ||
| Je | 1.0 | ||
| Jellyfish | 2.2.4, 2.2.6, 2.3.0 | ||
| jModelTest | 2.1.1 | ||
| jo | 1.3 | ||
| jq | 1.6 | ||
| juicer | 1.22.01 | ||
| Julia | 1.6.2, 1.7.1, 1.7.3 | ||
| Jupyter | 5.7.8, 6.0.3, 6.2.0 | ||
| jutils | 1.0 | ||
| JVARKIT | 20180405 | ||
| Kaiju | 1.6.2, 1.7.2 | ||
| KaKs | 1.2, 2.0 | ||
| Kalign | 3.3.1 | ||
| kallisto | 0.43.0, 0.44.0, 0.48.0 | ||
| khmer | 2.0, 2.1 | ||
| KIM | 1.7.2, 1.8.2, 1.9.3 | ||
| KING | 2.1.2 | ||
| KisSplice | 2.4.0-p1 | ||
| KLayout | 0.26.7 | ||
| KMC | 3.1.0, 3.1.1, 3.2.1 | ||
| kmerdb | 1.9.2 | ||
| KMOS | 0.3.21 | ||
| kneaddata | 0.7.4, 0.9.0 | ||
| Knitro | 12.2.0 | ||
| KofamScan | 1.3.0 | ||
| kover | 2.0.3 | ||
| Kraken | 2.0.6b, 2.0.8b, 2.1.2 | ||
| KrakenUniq | 0.5.8, 0.7.3 | ||
| Krona | 20161019 | ||
| ksnp | 3.021 | ||
| Ksrates | 1.1.1 | ||
| LACHESIS | 2.1 | ||
| Lambda | 0.9.4, 1.0.3, 2.0.0 | ||
| LAMMPS | 30Jul16, 7Aug19, 7Dec15 | ||
| LAMP | 2.5 | ||
| laneta | 20220517, 20220808, 20220812 | ||
| langdetect | 1.0.9 | ||
| LAPACK | 3.8.0 | ||
| Last | 916, 979 | ||
| LAStools | 20200114 | ||
| LASTZ | 1.02.00, 1.03.02, 1.04.00 | ||
| Lazypipe | 1.2 | ||
| LazyPredict | 0.2.8 | ||
| lbzip | 2.5 | ||
| LCModel | 6.3 | ||
| ldak | 5.2 | ||
| LDhat | 2.2a | ||
| ldsc | 1.0.1 | ||
| leafaudio | 0.1.0 | ||
| LEfSe | 20180219 | ||
| LEMON | 1.2.3 | ||
| LFMM | 1.4, 1.5 | ||
| Libint | 2.5.0, 2.5.0b | ||
| libMesh | 1.5.0 | ||
| libunistring | 0.9.7 | ||
| libvips | 8.5.4 | ||
| LIBXC | 4.2.3, 4.3.4 | ||
| LIBXSMM | 1.13 | ||
| LIBZMQ | 4.3.1 | ||
| Liftoff | 1.4.2 | ||
| LIGR | 2.05 | ||
| lima | 2.0.0, 2.2.0 | ||
| lingua | 1.0.1 | ||
| LINKS | 1.8.5, 1.8.6 | ||
| Linksbrowser | 2.14 | ||
| LIQA | 1.0.0 | ||
| LMAP | 1.0.2 | ||
| lncScore | 1.0.2 | ||
| lobSTR | 4.0.6 | ||
| localbrainage | 20210415 | ||
| localizer | 1.0.4 | ||
| LocusZoom | 1.4 | ||
| LoFreq | 2.1.3.1 | ||
| LongQC | 1.2.0c | ||
| LongRanger | 2.1.5, 2.2.2 | ||
| LongStitch | 1.0.3 | ||
| LoRDEC | 0.9 | ||
| LoRMA | 0.3, 0.5 | ||
| LRBinner | 0.1 | ||
| lrgapcloser | 09042018 | ||
| LS-DYNA | 700, 711, 901 | ||
| LSD2 | 1.6.5 | ||
| ltr_finder | 1.07 | ||
| LTRRetriever | 2.1, 2.5, 20170514 | ||
| Lua | 3.5.2 | ||
| Lucene | 7.7.1, 9.1.0 | ||
| lumpy-sv | 0.2.1, 0.2.13, 0.3.1 | ||
| LZO | 2.09 | ||
| M5nr | 20121126 | ||
| Macaulay2 | 1.15 | ||
| MACH | 1.0.18 | ||
| Mach2VCF | 20150515 | ||
| MACS | 2.0.10, 2.1.2, 2.2.7.1 | ||
| MafFilter | 1.3.0 | ||
| MAFFT | 7.294, 7.397, 7.490 | ||
| MAGeCK | 0.5.9.4 | ||
| MAGeCK-VISPR | 0.5.6 | ||
| MAGeCKFlute | 1.14.0 | ||
| Magenta | 2.1.2 | ||
| MAGMA-GWAS | 1.09 | ||
| magus | 20220121 | ||
| MAJIQ | 2.2, 2.3 | ||
| Maker | 2.31.10, 2.31.6, 3.01.03 | ||
| MAnorm | 20120316 | ||
| MANTA | 1.6.0 | ||
| mantis | 1.0.4 | ||
| mapclassify | 2.4.2 | ||
| MapThin | 1.11 | ||
| Maq | 0.7.1 | ||
| MarginPolish | 1.0.0 | ||
| MARK | 2.0.1 | ||
| MarkerMiner | 20150710 | ||
| Mash | 1.1, 2.3 | ||
| MasHmap | 2.0 | ||
| mashtree | 1.2.0 | ||
| MASS | 1.1.1 | ||
| MASSMINE | 0.10.0, 0.11.0, 0.9.5 | ||
| MaSuRCA | 4.0.8, 4.0.9, 4.1.0 | ||
| Mathematica | 12.1.1.0 | ||
| MATLAB | 2020a, 2020b, 2022a | ||
| MATS | 4.0.1, 4.0.2, 4.1.0 | ||
| Mauve | 2.3.1 | ||
| mawk | 1.3.4-20150503 | ||
| maxbin | 2.1.1 | ||
| Maxima | 5.41.0 | ||
| MC | 4.6.1 | ||
| mCarts | 1.0.2 | ||
| mccortex | 1.0 | ||
| MCL | 12-135, 14-137 | ||
| MCNP | 6, 6.1 | ||
| MCNPX | 2.7.0 | ||
| MCR | 2019b, 2020a, 2020b | ||
| MCScanX | 20130328 | ||
| mdanalysis | 1.1.1 | ||
| MECAT | 20180308 | ||
| Medaka | 1.0.1, 1.2.1, 1.6.0 | ||
| Medusa | 1.6 | ||
| MEGA | 7.0.26 | ||
| Mega2 | 4.9.2, 6.0.0 | ||
| MEGAHIT | 1.1.1, 1.1.4 | ||
| Megalodon | 2.0.0 | ||
| MEGAN | 5.10.3, 6.23.4, 6.4.15 | ||
| MEGASAT | 1.0 | ||
| Megraft | 1.0.2 | ||
| MELD | 0.4.14, 0.4.19, 0.5.9 | ||
| MELTING | 4.3.1 | ||
| MEME | 5.0.2, 5.0.5, 5.4.1 | ||
| MentaLiST | 0.1.3 | ||
| Meraculous | 2.0.5 | ||
| Mercurial | 4.8.2 | ||
| merge_peaks | 0.1.0 | ||
| Merlin | 1.1.2 | ||
| Merqury | 1.1, 1.3 | ||
| Meryl | 1.0 | ||
| MeShClust | 1.2.0 | ||
| Meshroom | 2019.2.0 | ||
| MET | 10.0 | ||
| Meta-Marc | 1.0.0 | ||
| Meta-Tissue | 0.4 | ||
| MetaBAT | 0.32.4, 2.13 | ||
| MetaBCC-LR | 2.0.0 | ||
| Metabin | 1.0 | ||
| metabolic | 4.0 | ||
| MetaCherchant | 0.1.0 | ||
| MetaCluster | 5.0b | ||
| MetaCompare | 20181016 | ||
| metacrast | 20200309 | ||
| MetaGeneMark | 2.10, 3.26 | ||
| METAL | 20110325 | ||
| MetaLAFFA | 1.0.0 | ||
| MetaMaps | 20201207 | ||
| METANNOT | 20171129 | ||
| Metaphlan | 3.0.3, 3.1.0, 4.0.1 | ||
| MetaPhlAn2 | 2.7.7 | ||
| MetaPhysicl | 1.0.0 | ||
| MetaSV | 0.5.4 | ||
| MetaVelvet | 1.2.06 | ||
| metaWRAP | 1.2 | ||
| Metaxa2 | 2.1.1, 2.1.3 | ||
| MethylDackel | 0.5.0, 0.6.1 | ||
| methylpy | 1.2.9 | ||
| Metilene | 0.2.8 | ||
| METIS | 5.1.0 | ||
| Mfannot | 20180405 | ||
| mfold | 3.6 | ||
| mg-rast | 20150919 | ||
| MGEfinder | 1.0.5 | ||
| MGERT | 1.0.1 | ||
| MGEScan | 20160416 | ||
| MGLTools | 1.5.7 | ||
| MHAP | 1.6 | ||
| MHCflurry | 1.4.3 | ||
| MIA | 20130201 | ||
| MicrobeAnnotator | 2.0.5 | ||
| MIDAS | 1.3.2, 20160830 | ||
| MIGRATE-N | 4.2.14, 4.4.4, 5.0.4 | ||
| Mikado | 2.3.3 | ||
| MIKE | 1.0 | ||
| Minced | 0.2.0 | ||
| Minia | 3.2.6 | ||
| Miniasm | 0.2-r168, 0.3-r179 | ||
| MiniCaller | 20161201 | ||
| minigraph | 0.15 | ||
| minimac | 1-20130717, 3-20150727 | ||
| minimac2 | 2-20140915 | ||
| minimap | 2.1t, 2.21, 2.9-r720 | ||
| minimap2 | 2.24 | ||
| Minipolish | 0.1.3 | ||
| MinkowskiEngine | 0.5.3 | ||
| MinPath | 1.4 | ||
| MIRA | 4.0.rc1, 4.9.6, 5rc2 | ||
| miRanda | 1.9 | ||
| miRBShunter | 0.2 | ||
| mirdeep | 0.1.0, 0.1.1, 2.0.1.3 | ||
| miRDP2 | 1.1.4 | ||
| Mireap | 0.20 | ||
| miRge | 2.0 | ||
| Misa | 1.0 | ||
| MISO | 0.5.3 | ||
| MITE-Hunter | 20111101 | ||
| MITObim | 1.9.1 | ||
| MitoFinder | 1.0.2, 1.1, 1.4 | ||
| mitohifi | 2.2 | ||
| MitoPhAST | 3.0 | ||
| Mitsuba2 | 2.2.1 | ||
| MiXCR | 2.1.8, 3.0.13 | ||
| MixMHC2pred | 1.2 | ||
| MixMHCpred | 2.0.2 | ||
| mixmogam | 20190322 | ||
| MKL | 2018.1.163, 2019.1.144, 2020.0.166 | ||
| mlcoalsim | 1.9916b | ||
| mlpack | 3.4.2 | ||
| mlst | 2.15.2 | ||
| mlstcheck | 2.1 | ||
| MMSEQ | 1.0.8 | ||
| MMseqs2 | 11, 12 | ||
| MMvec | 1.0.5, 1.0.6 | ||
| MNEtools | 0.22.0 | ||
| MOABS | 1.2.9, 1.3.2, 1.3.4 | ||
| mobsuite | 3.1.0 | ||
| MOCCASIN | 0.25 | ||
| MODELLER | 9.14, 9.23 | ||
| MODELTEST | 0.1.2, 0.1.7 | ||
| Modulus | 21.06, 22.03 | ||
| Molden | 5.0 | ||
| momi | 2.1.19 | ||
| monai | 0.8, 0.8.1, 0.9.0 | ||
| MONAI label | 0.3.2 | ||
| MongoDB | 4.0.3 | ||
| Moni | 0.2.0 | ||
| mono | 5.18 | ||
| Monolix | 4.3.2 | ||
| MOOSE | 20200722, 20210726, 20220610 | ||
| Mosaic | 1.7.4 | ||
| MOSAIK | 2.1.33, 2.2.3, 2.2.30 | ||
| Mosdepth | 0.2.3, 0.3.1 | ||
| Mothur | 1.38.1, 1.41.3, 1.46.1 | ||
| MotionCor2 | 1.2.3, 1.3.1 | ||
| mOTU | 1.1 | ||
| mOTUs | 2.5.1 | ||
| MountainSort | 0.9.0 | ||
| MP-EST | 1.4 | ||
| MPACK | 0.8.0 | ||
| MPB | 1.5 | ||
| MPBoot | 1.1.0 | ||
| MPFR | 3.1.6 | ||
| mpinterfaces | 20170613 | ||
| MrBayes | 3.2.4, 3.2.5, 3.2.6 | ||
| MRIcroGL | 20201102, 20210327, 20211006 | ||
| MRIcron | 201306, 20161012, 20190911 | ||
| mriqc | 0.11.0, 0.16.1, 22.0.1 | ||
| MRtrix | 3.0.1, 3.0.3, 3.0rc2 | ||
| ms | 20171108 | ||
| ms-dial | 4.4.8 | ||
| msfinder | 3.52 | ||
| mSINGS | 20180810 | ||
| MSMC-Tools | 20190614 | ||
| msprime | 0.7.4 | ||
| MstatX | 1.0 | ||
| MSTmap | 1.0 | ||
| msvar | 1.3 | ||
| MTG2 | 2.15 | ||
| mTR | 20210526 | ||
| Mugsy | 1.2.3 | ||
| MultiQC | 1.12, 1.7 | ||
| MUMmer | 3.23, 4.0.0beta2 | ||
| MUSCLE | 3.8.31 | ||
| MuSE | 1.0rc | ||
| Musket | 1.1 | ||
| MuTect | 1.1.4, 1.1.7 | ||
| MutSig | 1.4, 1.41 | ||
| mvftools | 20191124 | ||
| mxnet | 22.08 | ||
| MZMine | 2.41, 2.52, 2.53 | ||
| NAMD | 2.14, 2.14b2, 3.0 Alpha | ||
| NANO | 2.8.2 | ||
| nanocomp | 1.17.0 | ||
| NanoCount | 0.2.1 | ||
| Nanodisco | 1.0.3 | ||
| Nanofilt | 2.7.1 | ||
| nanolyse | 1.2.0 | ||
| NanoPlot | 1.30.1 | ||
| Nanopolish | 0.11.1, 0.13.2, 20171006 | ||
| nanostripper | 0.1 | ||
| NanoSV | 1.2.0, 1.2.3, 1.2.4 | ||
| NanoVar | 1.3.9 | ||
| Napari | 0.3.8, 0.4.7 | ||
| NBODY | 6 | ||
| NCBI BLAST+ | 2.7.1, 2.8.1, 2.9.0 | ||
| NCBI C++ Toolkit | 12.0.0, 21.0.0, 7.0.0 | ||
| NCBI GenBank Tools | 20140130 | ||
| ncbi-vdb | 2.6.3, 2.8.2 | ||
| nccl | 20.11 | ||
| ncftp | 3.2.5 | ||
| NCL | 6.1.2, 6.3.0 | ||
| NCO | 4.2.1, 4.4.3 | ||
| ncview | 2.1.2, 2.1.7 | ||
| NECAT | 202001019 | ||
| Necklace | 1.00 | ||
| NeEstimator | 2.1 | ||
| nemo | 1.0.0rc1, 1.0.1, 1.2.0 | ||
| neovim | 0.2.0 | ||
| NetCDF | 4.3, 4.3.3, 4.4.3 | ||
| NetCDF-C | 4.7.4, 4.8.1, 4.9.0 | ||
| NetCDF-F | 4.4.4, 4.5.3, 4.5.4 | ||
| NetLogo | 5.3.64, 6.1.1, 6.2.0 | ||
| NEURON | 7.7.2, 8.0.0, 8.2.1 | ||
| Newbler | 2.7, 2.8, 2.9 | ||
| newick-utils | 1.6 | ||
| newick_utils | 1.6, 1.7 | ||
| NewTargets | 20210215 | ||
| NextDenovo | 2.4.0 | ||
| Nextflow | 21.04.0, 21.10.6, 22.04.5 | ||
| NextGenMap | 0.5.5 | ||
| NextPolish | 1.3.1 | ||
| Nextstrain | 1.16.1 | ||
| nf-core | 1.12.1, 2.1 | ||
| NGC CLI | 2.10.1 | ||
| NGmerge | 0.3 | ||
| ngmlr | 0.2.6, 0.2.7 | ||
| ngs-bits | 0.1 | ||
| NGS-SDK | 1.2.4, 1.3.0 | ||
| ngscheckmate | 1.0 | ||
| ngstools | 20150816 | ||
| nilearn | 0.7.0, 0.9.0 | ||
| nimare | 0.0.5 | ||
| Nipype | 1.6.0, 1.7.0, 1.8.0 | ||
| nlp | 1.1, 1.2 | ||
| nlr-annotator | 0.7 | ||
| NLR-Parser | 1.0 | ||
| NMRPipe | 7.9, 8.2 | ||
| NONMEM | 7.3.0, 7.4.4 | ||
| nonpareil | 3.3.4 | ||
| Novoalign | 2.08.02, 3.00.02 | ||
| NOVOPlasty | 3.7, 4.2, 4.3 | ||
| nPhase | 1.1.3 | ||
| npScarf | 1.7 | ||
| nQuire | 20180405 | ||
| Nsight | 2022.1 | ||
| Nsightsys | 2022.2.1 | ||
| nt | 20220404 | ||
| ntEdit | 1.2.1 | ||
| nubeamdedup | 20200907 | ||
| NucDiff | 2.0.3 | ||
| NucleoATAC | 0.3.1 | ||
| Nullarbor | 1.41 | ||
| Numba | 0.36.2, 0.43.1, 0.48.0 | ||
| NUPACK | 3.2.2 | ||
| nvhpc | 11.1, 21.7 | ||
| nVidia HPC Compilers | 20.11 | ||
| NWChem | 6.8 | ||
| NxTrim | 0.4.1 | ||
| Oases | 0.2.08 | ||
| OCaml | 4.02.3 | ||
| OCOCO | 0.1.2.6 | ||
| octave | 6.4.0, 7.2.0 | ||
| odgi | 0.6 | ||
| Olego | 1.1.2, 1.1.5, 1.1.6 | ||
| OmicsBox | 1.1.78 | ||
| OMindel | 20180129 | ||
| omniCLIP | 0.1.0 | ||
| OMNIVERSE | beta211004 | ||
| OMSV | 1.0.1 | ||
| ONT-Bonito | 0.1.5, 0.5.3, 0.6.0 | ||
| ont_fast5_api | 2.0.1, 4.0.2 | ||
| ont_tutorial_cas9 | 20190705 | ||
| open-cravat | 2.0.1 | ||
| open3d | 0.13.0 | ||
| OPENACC | 16.7 | ||
| OpenBabel | 2.3.2, 2.4.1, 3.1.1 | ||
| OpenBLAS | 0.2.20 | ||
| OpenCL | 18.1.0.013 | ||
| OpenCV | 4.5.2 | ||
| OpenFOAM | 4.1, 5.0, 8.0 | ||
| OpenMM | 7.5, 7.5.0, 7.6.0 | ||
| OpenMPI | 4.0.4, 4.0.5, 4.1.1 | ||
| OpenNeuro | 3.17.4, 3.37.4 | ||
| OpenPIV-python | 0.21.2 | ||
| OpenPIV-python-gpu | 20190506-gpu | ||
| OpenSim | 4.3 | ||
| OpenSlide | 3.4.1 | ||
| OptiType | 1.3.1 | ||
| Orange3 | 3.3.6 | ||
| ORCA | 4.0.1.2 | ||
| OrganellePBA | 20180904 | ||
| OrthoFiller | 1.1.4 | ||
| OrthoFinder | 1.1.10, 2.3.11, 2.5.2 | ||
| Orthofisher | 0.1.2 | ||
| Orthograph | 0.6.3 | ||
| Orthologer | 2.2.0 | ||
| OrthoMCL | 2.0.3, 2.0.7 | ||
| osprey | 1.1.0 | ||
| OTB | 5.8.0 | ||
| p4est | 1.1, 2.8 | ||
| p4vasp | 0.3.29, 0.3.30 | ||
| p53MH | 20020901 | ||
| p7zip | 9.20.1 | ||
| PacBio | 10.2.0.133434, 11.0.0.146107, 7.0.1 | ||
| Package-GFE | 20150701 | ||
| PALADIN | 1.3.1 | ||
| PALES | 122 | ||
| PAML | 4.8a, 4.9a, 4.9h | ||
| Pandaseq | 20140808, 20150627 | ||
| Pandoc | 2.2.2.1 | ||
| pangolin | 2 | ||
| panseq | 3.2.1 | ||
| panX | 1.6.0 | ||
| PAPI | 5.5.1, 5.7.0 | ||
| parabricks | 3.5.0, 3.7.0 | ||
| parallel | 20150122, 20170322 | ||
| paralyzer | 1.5 | ||
| ParaView | 5.4.1, 5.7.0, 5.9.1.1 | ||
| ParaView Server | 5.10.1 | ||
| ParGenes | 1.2.0 | ||
| ParlAI | 1.3.0, 1.5.0 | ||
| Parsnp | 1.2, 1.5.0, 1.6.2 | ||
| PartitionFinder | 2.0.0-pre-20160513, 2.1.1-20161205, 2.1.1.0 | ||
| PASA | 2.0.2-r20151207, 2.2.0-r20171013, 2.4.1 | ||
| Pascal | 3.0.0 | ||
| PASTA | 0.2.0, 1.7.8, 20160616 | ||
| PATHd8 | 1.0 | ||
| pathoscope | 2.0.7 | ||
| PATRIC | 1.034 | ||
| PAUDA | 1.0.1 | ||
| PAUP | 4.0a166, 4.0a168, 4.0b10 | ||
| PB-Assembly | 0.0.6, 0.0.8 | ||
| pbalign | 20160921, 20161221 | ||
| PBCCS | 5.0.0 | ||
| pbcore | 1.7.1 | ||
| PBGCpp | 1.9.0 | ||
| pbipa | 1.8.0 | ||
| PBJelly | 15.8.24 | ||
| pbmm2 | 1.3.0 | ||
| pbrt | 20181017 | ||
| pbsmrtpipe | 0.63.0 | ||
| pbtranscript-tofu | 20150317, 20160119 | ||
| PCIT | 2014 | ||
| PCRE | 8.38, 8.39 | ||
| PDA | 1.0.3 | ||
| pdb2pqr | 2.1.0 | ||
| PeakSplitter | 1.0 | ||
| PEAR | 0.9.2 | ||
| peneasy | 20150530 | ||
| PennCNV | 1.0.5 | ||
| Perl | 5.16.0, 5.20.0, 5.24.1 | ||
| PerM | 0.4.0 | ||
| PETSc | 3.8.1, 3.8.3, 3.8.4 | ||
| PfamScan | 1.3, 1.5 | ||
| PGAP | 20220414 | ||
| PGDSpider | 2.0.9.0, 2.1.1.5 | ||
| pggb | 0.4.1, 20201106, 20210121 | ||
| PhaME | 1.0.3 | ||
| pharmcat | 1.8.0 | ||
| PHASE | 2.1.1 | ||
| PHAST | 1.5 | ||
| Phenix | 1.10.2155, 1.17.1, 1.8.1069 | ||
| PHI | 3.1.1, 3.1.2b, 3.1.6 | ||
| PhiSpy | 3.2 | ||
| PHITS | 2.76, 2.82, 2.84 | ||
| PHLAWD | 20170427 | ||
| PhotoScan | 1.4.1, 1.4.5 | ||
| Photutils | 0.5 | ||
| PHYLDOG | 20130116-dbg | ||
| PHYling | 1.0 | ||
| PHYLIP | 3.696 | ||
| PhyloAcc | 1.0 | ||
| PhyloBayes | 3.3f | ||
| phyloFlash | 3.3b4 | ||
| phylonet | 3.5.7, 3.8.2 | ||
| PhyloParser | 20180404 | ||
| PhyloPhlAn2 | 0.41 | ||
| phylopypruner | 1.2.3 | ||
| PhyloSift | 1.1 | ||
| phyloTF2 | 20210726 | ||
| Phyluce | 20180727, 20190308, 20191015 | ||
| PhyML | 3.0, 3.1 | ||
| phynd | 20200409 | ||
| Physher | 1.0.2 | ||
| PHYUTILITY | 2.7.1 | ||
| Phyx | 1.1 | ||
| PIA2 | 20180305 | ||
| Picard-tools | 2.5.0, 2.9.0, 2.9.2 | ||
| PICRUSt | 1.1.3, 1.1.4, 2.3.0b | ||
| PICSL | 1.3 | ||
| Piggy | 20171220 | ||
| Pigz | 2.4 | ||
| PILON | 1.22, 1.24 | ||
| Pindel | 0.2.5b8 | ||
| pipe-clip | 1.1.0 | ||
| pipits | 1.3.6, 1.4.0 | ||
| Piranha | 1.2.1 | ||
| PlantTribes | 1.0.4 | ||
| plasflow | 1.1 | ||
| PLAST | 1.0, 2.3.2 | ||
| platanus | 1.2.4 | ||
| Platon | 1.6 | ||
| Platypus | 0.8.1 | ||
| PLEK | 1.2.2 | ||
| Plink | 1.90b3.39, 2.00a2, 2.00a3LM | ||
| plinkseq | 0.10 | ||
| plotsr | 0.5.4 | ||
| PLUMED | 2.7.3, 2021.2 | ||
| pod5 | 20220621 | ||
| PolyGembler | 1.0 | ||
| PolyPHen | 2.2.2.r405b | ||
| polyply | 1.3.0 | ||
| pomoxis | 0.1.11, 0.2.5, 0.3.2 | ||
| popcorn | 20211104 | ||
| PopLDdecay | 3.40 | ||
| popoolation | 1.2.2 | ||
| Porechop | 0.2.4 | ||
| Poretools | 0.6.1 | ||
| portcullis | 1.2.3 | ||
| PosiGene | 20171113 | ||
| POV-Ray | 3.7 | ||
| pplacer | 1.1.alpha19 | ||
| PRANK | 170427, 20150803 | ||
| Predector | 20201110 | ||
| preplot | 14.0.2 | ||
| Preseq | 0.0.4 | ||
| PRICE | 1.2 | ||
| Primer3 | 2.3.4 | ||
| primus | 1.8.0 | ||
| PRINSEQ | 0.20.4 | ||
| PRINSEQ++ | 1.2 | ||
| ProbABEL | 0.4.2, 0.4.3, 0.4.5 | ||
| probalign | 1.4 | ||
| Processing | 3.4 | ||
| Prodigal | 2.6.2, 2.6.3 | ||
| ProDy | 2.0 | ||
| Program Database Toolkit | 3.20, 3.22, 3.24 | ||
| PROJ | 4.9.3, 5.1.0, 8.0.1 | ||
| Prokka | 1.12, 1.14.6 | ||
| Proovread | 1.03rcl, 2.12, 2.13 | ||
| ProSplign | 1.0.0 | ||
| Protege | 5.1.0 | ||
| Proteinortho | 4.26, 5.11, 5.16 | ||
| ProtExcluder | 1.2 | ||
| ProtHint | 2.6.0 | ||
| protobuf | 2.5.0, 3.5.1 | ||
| PROVEAN | 1.1.5 | ||
| PRSice | 2.3.3 | ||
| Pseudofinder | 1.0 | ||
| PsiCLASS | 1.0.1 | ||
| PSMC | 0.6.5 | ||
| psRobot | 1.2 | ||
| Pufferfish | 20200417 | ||
| PureCLIP | 1.1.1 | ||
| Purge_Dups | 1.0.1 | ||
| purge_haplotigs | 1.1.2 | ||
| pyani | 0.2.10 | ||
| Pybedtools | 0.8.2 | ||
| PyBSASeq | 20200623 | ||
| PyCharm | 2018.3 | ||
| pychopper | 2.5.0, 2.7.1 | ||
| PyCogent | 1.9 | ||
| pycoqc | 2.5.2 | ||
| PyDeface | 2.0.0 | ||
| pyEGA3 | 3.4.1 | ||
| PyEXR | 0.3.10 | ||
| Pyfaidx | 0.5.2 | ||
| pyfasta | 0.5.2 | ||
| pygot | 20170518 | ||
| pyhdf | 0.9.0 | ||
| PyHIST | 1.0 | ||
| PyPHLAWD | 20180416, 20190414 | ||
| Pyroms | 1.0 | ||
| PyRosetta | r56324 | ||
| pyrpipe | 0.0.3 | ||
| Pysamstats | 1.1.2 | ||
| PySLURM | 18.08.04 | ||
| Python | 3.6.3, 3.6.5, 3.8 | ||
| Python-core | 3.6.5, 3.7, 3.8 | ||
| Python2 | 2.7.11 | ||
| PyTorch | 1.11.0, 1.9.0 | ||
| pytorch | 1.7.1, 1.8.1, 1.9.0 | ||
| PyVCF | 0.6.0, 0.6.8 | ||
| PyVista | 0.26.1 | ||
| pyweka | 0.3.18 | ||
| QAPA | 1.3.1 | ||
| qcat | 1.1.0 | ||
| qctool | 2.0.1 | ||
| QD | 2.3.22 | ||
| QDD | 3.1.2 | ||
| QGIS | 2.18.0, 3.14.0 | ||
| QIIME | 1.9.1 | ||
| QIIME2 | 2021.11, 2021.4, 2022.8 | ||
| QMCPACK | 3.4.0 | ||
| QRNA | 2.0.4 | ||
| QT | 4.8.3, 5.12.9, 5.15.4 | ||
| QTL-seq | 2.2.2 | ||
| QTLtools | 1.2, 1.3.1 | ||
| Quake | 0.3 | ||
| QualiMap | 2.1.2 | ||
| Quantas | 1.0.4, 1.0.8, 1.0.9 | ||
| quantisnp | 2 | ||
| QuartetScores | 1.0.0 | ||
| QUAST | 4.4, 5.0.0, 5.0.2 | ||
| quickmerge | 0.3 | ||
| Quickquartet | 1.0.0 | ||
| QUIP | 20201029, 20210626 | ||
| QuorUM | 1.0.0 | ||
| R | 4.0, 4.1, 4.2 | ||
| r-index | 20190711 | ||
| r8s | 1.8, 1.81 | ||
| RACA | 0.9.1.1 | ||
| Racon | 1.3.3, 1.4.10, 1.4.13 | ||
| RADICAL | 0.2 | ||
| radorgminer | 0.9 | ||
| RaGOO | 1.11 | ||
| Ragout | 2.3 | ||
| RagTag | 1.0.0, 2.0.1 | ||
| rainbow | 2.0.4 | ||
| Rainbowfish | 0.1.0 | ||
| RAiSD | 2.8 | ||
| Randfold | 2.0.1 | ||
| ranger | 1.9.3 | ||
| rapidsai | 21.10, 21.12, 22.04 | ||
| rapidtide | 1.9.0 | ||
| RAPSearch | 2.24 | ||
| Rascaf | 1.0.2 | ||
| RAVE | 2.1 | ||
| Raven | 1.8.1 | ||
| RAxML | 8.2.10, 8.2.12, 8.2.8 | ||
| RAxML-NG | 0.9.0, 1.0.2, 1.1.0 | ||
| razers3 | 3.5.7 | ||
| rbp-maps | 0.1.4 | ||
| rclone | 1.57.0, 1.58.1 | ||
| Rcorrector | 1.0.4 | ||
| RDKit | 2020092 | ||
| rDnaTools | 0.1.3 | ||
| READemption | 1.0.0 | ||
| REAPR | 1.0.18 | ||
| Rebaler | 0.2.0 | ||
| reCOGnizer | 1.3.3 | ||
| recon | 1.08 | ||
| Redis | 2.8.13, 2.8.19 | ||
| REDItools2 | 20200701 | ||
| Redundans | 0.14a | ||
| ReFrame | 3.2 | ||
| regtools | 0.5.2 | ||
| release | 12082021 | ||
| RELION | 3.0.2, 3.0b, 3.1.0 | ||
| RelocaTE2 | 2.0.1 | ||
| REMORA | 1.8.2, 1.8.3, 1.8.5 | ||
| REPdenovo | 20170222 | ||
| RepeatAnalysis | 0.10.0, 0.12.2 | ||
| RepeatAnalysisTools | 20210506 | ||
| RepeatExplorer | 20150506, 20180517 | ||
| RepeatMasker | 4.0.5, 4.0.9, 4.1.1 | ||
| RepeatModeler | 1.0.8, 2.0 | ||
| repeatscout | 1.0.5 | ||
| RepeatSeq | 0.8.2 | ||
| reptile | 1.1 | ||
| ResFinder | 4.0 | ||
| Resistome | 20170111 | ||
| RevBayes | 1.0.7, 1.0.9, 1.1.1 | ||
| RFMIX | 2.03 | ||
| RGAugury | 20220107 | ||
| RGI | 4.2.2, 5.1.1 | ||
| RGIS | 20180211, 20180814 | ||
| RHash | 1.3.3 | ||
| RiboCode | 1.2.11 | ||
| riboPicker | 0.4.3 | ||
| RiboTaper | 1.3.1a | ||
| RIGERJ | 2.0.2 | ||
| rMATS turbo | 4.1.2 | ||
| rmats2sashimiplot | 2.0.3, 2.0.4 | ||
| Rmpi | 0.6.9 | ||
| RNAFramework | 2.7.2 | ||
| RNAhybrid | 2.1.1 | ||
| RNAmmer | 1.2 | ||
| rnaQUAST | 1.5.1 | ||
| RNAsalsa | 0.8.1 | ||
| rnaseqlib | 20150721 | ||
| RNAstructure | 6.3 | ||
| Roary | 3.12.0, 3.4.1 | ||
| ROOT | 5.34.17, 6.0, 6.06.02 | ||
| ROOTPy | 20160323 | ||
| Rosetta | 2014wk4, 2019.35.60890 | ||
| RoseTTAFold | 1.0.0 | ||
| rrnaselector | 1.0 | ||
| RSEG | 0.4.8 | ||
| RSEM | 1.2.31, 1.2.7, 1.3.3 | ||
| RSeQC | 2.6.4, 3.0.0 | ||
| RStudio | 1.4, 2021.09.0, 2022.02.3 | ||
| RTGTools | 3.7.1 | ||
| Ruby | 2.5.1 | ||
| Rust | 1.48.0, 1.52.1, 1.62.1 | ||
| rvtests | 2.1.0 | ||
| S.A.G.E | 6.4.2 | ||
| Sabre | 1.0 | ||
| saffrontree | 0.1.2 | ||
| Sailfish | 0.6.3 | ||
| Salmon | 1.1.0, 1.5.2, 1.8.0 | ||
| SALSA | 20171009, 20191001 | ||
| Sambamba | 0.6.3, 0.6.6, 0.6.9 | ||
| samblaster | 0.1.14, 0.1.24 | ||
| sampledock | 0.5.1 | ||
| SAMStat | 1.08 | ||
| Samtools | 1.7, 1.8, 1.9 | ||
| SAS | 9.3, 9.4 | ||
| Sate | 2.2.7 | ||
| Satsuma | 3.0 | ||
| Satsuma2 | 20161123, 3.1 | ||
| sc-im | 0.8.2 | ||
| Scala | 2.11.5, 3.0.1 | ||
| Scalablast | 2.4.53 | ||
| ScaLAPACK | 2.0.2, 2.1.0 | ||
| scallop | 0.10.5 | ||
| Scalpel | 0.1.1, 0.5.3 | ||
| Schrodinger Suite | 2019-3, 2020-4, 2021-2 | ||
| Scipion | 1.2 | ||
| SCIrun | 5.0.Z | ||
| Scoary | 1.6.16 | ||
| Scons | 2.5.1, 3.1.2 | ||
| SCOP | 20180311 | ||
| Scrappie | 1.4.2 | ||
| SCRATCH-1D | 1.0, 2.0 | ||
| Screen | 4.8.0 | ||
| SCRIPTURE | 20101211 | ||
| Scythe | 0.991 | ||
| sdsl | 2.1.1 | ||
| SE-MEI | 0.1.0 | ||
| SeCaPr | 1.1.12, 2.0.2, 2.1.1 | ||
| Segemehl | 0.1.9, 0.3.4 | ||
| segment-liftover | 20211021 | ||
| SEPP | 20160614 | ||
| Seq-Gen | 1.3.3 | ||
| seq_crumbs | 20150120 | ||
| SeqKit | 0.10.2, 0.8.0, 2.0.0 | ||
| seqmagick | 0.8.4 | ||
| SeqMap | 1.0.13 | ||
| SEQPower | 1.1.1 | ||
| SeqPrep | 0.5, 1.1 | ||
| seqscreen | 3.3 | ||
| seqtk | 1.3, 20140729 | ||
| SEQuel | 1.0.1 | ||
| SequelQC | 1.1.0 | ||
| seqwish | 0.7, 20190509 | ||
| SeqyClean | 1.8.10 | ||
| SeSiMCMC | 4.36 | ||
| SExtractor | 2.19.5 | ||
| SHAPE-MaP | 1.2 | ||
| SHAPEIT | 2.12, 2.5 | ||
| SHAPEIT4 | 4.2.2 | ||
| ShapeMapper | 2.1.3, 2.1.5 | ||
| SHARCGS | 1.2.11 | ||
| Shasta | 0.1.0 | ||
| SHEsisPlus | 1.0, 1.01 | ||
| shogun | 6.1.3 | ||
| Shortbred | 0.9.4 | ||
| shovill | 1.1.0 | ||
| SHRiMP | 2.2.3 | ||
| shustring | 2.6 | ||
| SibeliaZ | 1.2.2, 1.2.3, 1.2.4 | ||
| SICER | 1.1 | ||
| Sickle | 1.200, 1.33 | ||
| Siesta | 3.2, 4.1b2, 4.1b3 | ||
| SIFT | 4.0.3b | ||
| SIGffRid | 1.1 | ||
| SignalP | 4.1c, 5.0b | ||
| SiLiX | 1.2.11, 1.3.0 | ||
| silo | 4.7 | ||
| sim4 | 20121010 | ||
| Sim4Life | 7.0.1 | ||
| Simka | 1.5.3 | ||
| SimNIBS | 3.2.1 | ||
| SimSeq | 4.12.2011 | ||
| Simulia | 2019 | ||
| SInC | 20140120 | ||
| sine_scan | 1.1.1 | ||
| Singularity | 3.7.4 | ||
| SIPeS | 2.0 | ||
| sisl | 0.8.3 | ||
| skmer | 3.2.1 | ||
| Slamdunk | 0.4.1, 0.4.2 | ||
| SLAW | 20211217 | ||
| Slicer | 4.13.0, 4.3.1, 5.0.3 | ||
| slow5tools | 0.5.1 | ||
| slurm-drmaa | 1.1.2, 1.1.3 | ||
| smalt | 0.7.6 | ||
| SMARTdenovo | 20180219 | ||
| smartie-sv | 20180308 | ||
| SMC++ | 1.15.4 | ||
| Smetana | 1.1.0 | ||
| SMR | 1.03 | ||
| SMRT-SV | 2.0.0 | ||
| SMS | 1.7 | ||
| Smudgeplot | 0.2.4 | ||
| Snakemake | 6.4.1, 7.5.0 | ||
| SNAP | 0.15.4, 2.0.0, 20100728 | ||
| SNAPE-pooled | 20130407 | ||
| SNeP | 1.1 | ||
| Sniffles | 1.0.11, 1.0.6, 1.0.8 | ||
| Sniffles2 | 2.0.6 | ||
| Snippy | 20160419, 4.6.0 | ||
| SNP-Pipeline | 1.0.1 | ||
| SNP-sites | 2.0.3 | ||
| snp2hla | 1.0.3 | ||
| SnpEff | 4.3r, 4.3t, 5.0 | ||
| snpflip | 20190515 | ||
| SNPGenie | 20190620 | ||
| SNPhylo | 20140701 | ||
| SNPsplit | 0.5.0 | ||
| SNPTEST | 2.5.2 | ||
| SOAPaligner | 2.21 | ||
| SOAPdenovo | 1.05, 2.04 | ||
| SOAPdenovo-Trans | 1.01, 1.03 | ||
| SOAPec | 2.03 | ||
| SOAPnuke | 2.1.0 | ||
| SOAPsplice | 1.10 | ||
| SODA | 20200930 | ||
| SOLAR | 8.4.2 | ||
| SomaticSeq | 3.6.2 | ||
| SortaDate | 20190705 | ||
| SortMeRNA | 2.1, 4.0 | ||
| SourceTracker2 | 2.0.1 | ||
| Sourmash | 2.0.1 | ||
| SoX | 14.4.2 | ||
| SpaceRanger | 1.3.1 | ||
| SPAdes | 3.15.3, 3.7.1, 3.8.0 | ||
| SparCC | 201608 | ||
| Spark | 2.2.0, 3.1.1 | ||
| sparsehash | 2.0.3 | ||
| SPARTA+ | 2.60 | ||
| Spec2nii | 0.3.4 | ||
| SpeedSeq | 0.1.2 | ||
| Spidey | 20150922 | ||
| SpinalCordToolbox | 5.4 | ||
| SplAdder | 2.4.2 | ||
| SpliceGrapher | 0.2.5 | ||
| SpliceTrap | 0.90.5 | ||
| SPM | 12b, 8, 8r5236 | ||
| spruceup | 2019.2.3 | ||
| Sputnik | 1.0 | ||
| spyder | 4.1.4, 5.1.1, 5.3.2 | ||
| SQANTI | 1.2 | ||
| SQANTI2 | 5.0 | ||
| SQANTI3 | 0.1, 1.6, 4.2 | ||
| SQL Developer | 4.1.2 | ||
| SQLite | 3.33.0, 3.8.8.2 | ||
| SqueezeMeta | 1.4.0, 1.5.2 | ||
| squigglekit | 1.0.0 | ||
| squigglenet | 1.0 | ||
| SRA | 2.10.9, 3.0.0 | ||
| sra-human-scrubber | 1.1 | ||
| SRAssembler | 1.0.0 | ||
| SSM | 20210511 | ||
| SSPACE | 2.0, 3.0 | ||
| ssr_pipeline | 0.951 | ||
| Stacks | 2.53, 2.55, 20190403 | ||
| Staden | 1.14.6 | ||
| Stampy | 1.0.31 | ||
| staphb-toolkit | 1.2.0, 1.3.10 | ||
| STAR | 2.7.5c, 2.7.6a, 2.7.9a | ||
| STAR-CCM+ | 14.04.011, 15.02.009, 8.06 | ||
| STAR-Fusion | 1.1.0, 1.3.1, 1.9.1 | ||
| starseqr | 0.6.7 | ||
| Stata | 10.1, 13 | ||
| stringMLST | 0.4 | ||
| Stringtie | 1.3.4d, 2.0.4, 2.1.3b | ||
| Structure | 2.3.3, 2.3.4 | ||
| Structure_threader | 1.3.10 | ||
| stylegan3 | 20211028 | ||
| SU2 | 7.0.6 | ||
| Subread | 1.6.2, 2.0.0, 2.0.3 | ||
| Subversion | 1.9.7 | ||
| SUMO | 1.13.0, 1.2.0, 1.9.2 | ||
| SUNDIALS | 2.3.0, 2.5.0, 3.0.0 | ||
| supercell | 20170602 | ||
| SuperCRUNCH | 1.2.1 | ||
| Supernova | 1.2.1, 2.0.0, 2.1.1 | ||
| SUPPA | 2.3 | ||
| Survival_Kit | 6.12 | ||
| SURVIVOR | 1.0.6 | ||
| SVDetect | 0.8b | ||
| svim | 1.4.2 | ||
| svim-asm | 1.0.2 | ||
| swarm | 1.2.11 | ||
| Sweed | 3.3.2 | ||
| SWIG | 2.0.9, 3.0.12, 3.0.8 | ||
| SWSC-EN | 1.0.0 | ||
| Synima | 20210908 | ||
| syri | 1.5.4 | ||
| TACO | 0.7.3 | ||
| Taiyaki | 5.0.1 | ||
| talesf | 20160814 | ||
| Tandem-Genotypes | 1.4.0 | ||
| Tantan | 13 | ||
| Tapestri | 2.0.1 | ||
| tapir | 20160825 | ||
| TAPIS | 1.2.1 | ||
| TASSEL | 5.0, 5.2.20, 5.2.29 | ||
| TAU | 2.23, 2.26, 2.26.3 | ||
| Tax4Fun | 0.3.1 | ||
| taxMaps | 0.1 | ||
| TaxonKit | 0.9.0 | ||
| Taxtastic | 0.5.7, 0.9.1 | ||
| tbb | 2017_20161128 | ||
| tcllib | 1.18 | ||
| tcoffee | 10.00.r1613, 9.03.r1318 | ||
| TDNAscan | 20210304 | ||
| Tecplot 360 EX | 2015R1 | ||
| tellseq | 1.0.0 | ||
| TEMP | 20170731 | ||
| TEMP2 | 0.1.4 | ||
| TensorFlow | 2.6.0, 2.7.0, 2.8.0 | ||
| TESS | 2.3.1 | ||
| Test | 1.0 | ||
| TetGen | 1.5.0 | ||
| TEToolkit | 1.5.1 | ||
| TEtools | 20180213 | ||
| Texlive | 20191127, 2020 | ||
| TGICL | 2.1 | ||
| TGSGapCloser | 1.0.3 | ||
| the_silver_searcher | 2.2.0 | ||
| Theano | 1.0.4 | ||
| Themisto | 0.2.0, 1.1.0 | ||
| Tiara | 1.0.2 | ||
| tiff | 3.8.0, 4.0.10 | ||
| Tigmint | 1.1.2 | ||
| Tmux | 2.9, 3.1 | ||
| TNTBLAST | 2.04 | ||
| ToFU2 | v17 | ||
| toil | 3.3.0, 3.3.3 | ||
| Tombo | 1.4, 1.5, 1.5.1 | ||
| Tophat | 2.1.0, 2.1.1, 2.1.2 | ||
| torch-geometric | 1.3.2 | ||
| TotalView | 8.12 | ||
| TPMcalculator | 0.0.3 | ||
| TPP | 4.7.0, 4.7.1, 5.0.0 | ||
| TraCeR | 20160519 | ||
| TrackTools | 2011 | ||
| TrackVis/DTK | 0.5.2.2, 0.6.0.1 | ||
| Tracula | 5.3.2014_05_26 | ||
| traitRate | 1.1 | ||
| Trans-ABySS | 2.0.1 | ||
| TransDecoder | 5.3.0, 5.4.0, 5.5.0 | ||
| TRANSIT | 2.5.2, 3.2.3 | ||
| Transrate | 1.0.1 | ||
| TransVar | 2.3.3 | ||
| TreeBreaker | 20160621 | ||
| TreeMix | 1.12 | ||
| treePL | 20150305 | ||
| TREEPUZZLE | 5.3 | ||
| TreeShrink | 1.3.1, 1.3.2 | ||
| TreeTime | 0.7.5, 0.8.1 | ||
| trelis | 16.3 | ||
| TRF | 4.04, 4.09.1 | ||
| Trilinos | 12.12.1, 12.18.1, 12.6.4 | ||
| Trim Galore | 0.4.4, 0.5.0, 0.6.5 | ||
| trim_isoseq_polya | 0.0.3 | ||
| trimAl | 1.2 | ||
| TriMetAss | 1.1 | ||
| Trimmomatic | 0.33, 0.36, 0.39 | ||
| Trinity | r20130225, r20131110, r20140413 | ||
| Trinotate | 3.0.1, 3.2.0 | ||
| triobinning | 0.2.3 | ||
| TRIPLEC | 1.0 | ||
| TRITONSERVER | 21.08 | ||
| tRNAscan-Se | 1.23 | ||
| TRUST4 | 1.0.2b | ||
| Trycycler | 0.4.2 | ||
| TURBOMOLE | 7.4.1 | ||
| TWINSCAN | 4.1.2 | ||
| Ubuntu | 20.04, 22.04 | ||
| UCSC | 20200320, 20210803 | ||
| ucsc-fafiltern | 377 | ||
| ucsc-maskoutfa | 377 | ||
| UCX | 1.11.2, 1.9.0 | ||
| UDUNITS | 2.2.17 | ||
| ufraw | 0.22 | ||
| ugtm | 1.1.6 | ||
| UKFractography | 20200127 | ||
| umi-tools | 0.5.5 | ||
| UNAFold | 3.8 | ||
| Unanimity | 20171108, 3.4.1 | ||
| UNCALLED | 2.2 | ||
| Unicycler | 0.4.8 | ||
| Unrar | 0.0.1, 4.20 | ||
| uproc | 1.2.0 | ||
| uropa | 4.0.2 | ||
| USEARCH | 9.0.2132, 9.1.13, 9.2.64 | ||
| UShER | 0.1.4, 0.4.1, 0.5.2 | ||
| V-Phaser | 02112013 | ||
| v-pipe | 2.0.0 | ||
| VAIR | 0.7.0 | ||
| Valgrind | 3.11.0, 3.15.0, 3.8.1 | ||
| Valouev | 20160325 | ||
| vamb | 3.0.2 | ||
| VAMPIR | 9.1 | ||
| VarDictJava | 1.6.0, 20160521, 20170531 | ||
| varnorm | 0.21 | ||
| VarScan | 2.3.6 | ||
| VarSim | 0.8.4, 0.8.6 | ||
| VarSimLab | 20180220, 20180921 | ||
| vasp | 5.4.4, 6.1.0, 6.2.0 | ||
| vaspkit | 1.2.5 | ||
| VAST-TOOLS | 2.5.1, 20150506 | ||
| VCF-kit | 0.2.6 | ||
| vcf-validator | 0.6 | ||
| vcfanno | 0.2.8, 0.3.3 | ||
| vcflib | 1.0.1 | ||
| vcftools | 0.1.15, 0.1.16, 0.1.9 | ||
| vcontact | 20190512 | ||
| VDJtools | 1.1.7, 1.2.1 | ||
| Velvet | 1.2.10, 1.2.10-long | ||
| VEP | 83, 88.8, 92 | ||
| Vermouth-martinize | 0.7.2 | ||
| VeryFastTree | 3.0.1 | ||
| vg | 1.33.0, 1.38.0, 1.39.0 | ||
| vibrant | 1.2.0 | ||
| ViennaRNA | 2.2.6, 2.4.18 | ||
| ViewBS | 0.1.10, 0.1.9 | ||
| Vim | 8.1.1566, 8.2.2465 | ||
| viralmsa | 1.1.10, 1.1.12 | ||
| VirSIeve | 20210406 | ||
| VirtualCell | 7.1 | ||
| VIRULIGN | 1.0.2 | ||
| VirusDetect | 1.7 | ||
| VirusFinder | 2.0 | ||
| visit | 2.13.3, 3.0.1, 3.1.4 | ||
| VISPR | 0.4.14 | ||
| VMD | 1.9.1, 1.9.3 | ||
| vscode | 1.38.1, 1.65.2 | ||
| VSearch | 20151022, 20161209-2.3.4 | ||
| vt | 0.57721, 20140903, 20160129 | ||
| VTC | 0.9.3 | ||
| VTK | 8.2.0, 9.0.3, 9.1.0 | ||
| w2rap-contigger | 20161124 | ||
| Wannier90 | 1.2, 2.1.0 | ||
| WarpedLMM | 0.21 | ||
| WaveGAN | 20190829 | ||
| WDSSII | 5 | ||
| WebLogo | 2.8.2, 3.3, 3.5.0 | ||
| Weka | 3.8, 3.8.5 | ||
| Wengan | 0.2 | ||
| wgd | 1.1.1 | ||
| WGS Assembler | 8.3rc1.r4638, 8.3rc2 | ||
| Wgsim | 0.3.1-r13 | ||
| WHAMM | 0.14a | ||
| WhatsHap | 1.1 | ||
| whiteboxtools | 1.5.0 | ||
| Wine | 4.0.0, 7.0.0 | ||
| Wise | 2.2.0, 2.4.1 | ||
| WIsH | 1.0 | ||
| WoLFPSort | 0.2 | ||
| WOMBAT | 20180118 | ||
| workbench | 4.1.1 | ||
| wtdbg | 2.1, 2.4, 2.5 | ||
| WU BLAST | 2.0 | ||
| Wub | 0.2.0, 0.4.0 | ||
| xander | 20151222 | ||
| Xapian | 1.4.4 | ||
| XCrySDen | 1.5.60 | ||
| Xerces | 3.1.4 | ||
| xesmf | 0.6.2 | ||
| xpclr | 1.0, 1.1.1 | ||
| Xterm | 1.1 | ||
| XWAS | 3.0 | ||
| XY-Meta | 20200413 | ||
| XZ | 5.2.2 | ||
| YAGO | 4 | ||
| YAHA | 0.1.82 | ||
| YAK | 0.1 | ||
| YASM | 1.3.0 | ||
| YASRA | 2.33 | ||
| yolov4_darknet | 4-pre | ||
| yolov5 | 4.0 | ||
| Zagros | 1.0.0 | ||
| ZEO++ | 0.2.2 | ||
| zorro | 2.2 | ||
| Zstd | 1.5.0 | ||
| ZUMIS | 2.6.0 | [{{{website}}}}}] | {{{categories}}}}} |