Ancestryhmm

From UFRC
Revision as of 21:25, 9 May 2023 by Cabreraruizdiazj (talk | contribs) (Created page with "Category:SoftwareCategory:GenomicsCategory:Biology {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|ancestryhmm}} |{{#vardefine:url|https://github.com/russcd/Anc...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Description

ancestryhmm website  

A hidden Markov model approach for simultaneously estimating local ancestry and admixture time using next generation sequence data in samples of arbitrary ploidy.

Environment Modules

Run module spider ancestryhmm to find out what environment modules are available for this application.

System Variables

  • HPC_ANCESTRYHMM_DIR - installation directory
  • HPC_ANCESTRYHMM_BIN - executable directory




Citation

If you publish research that uses ancestryhmm you have to cite it as follows:

Corbett-Detig, R. and Nielsen, R., 2017. A hidden Markov model approach for simultaneously estimating local ancestry and admixture time using next generation sequence data in samples of arbitrary ploidy. PLoS genetics, 13(1), p.e1006529.