Difference between revisions of "Amphora2"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|amphora2}} |{{#vardefine:url|https://github.com/martinwu...") |
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==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_DOC - documentation directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_EXE - test data directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_TAX- taxonomy data directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_TREE - tree data directory | ||
| + | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 16:42, 9 October 2017
Description
An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
AMPHORA2 is free software: you may redistribute it and/or modify its under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or any later version.
Required Modules
Serial
- amphora2
System Variables
- HPC_{{#uppercase:amphora2}}_DIR - installation directory
- HPC_{{#uppercase:amphora2}}_BIN - executable directory
- HPC_{{#uppercase:amphora2}}_DOC - documentation directory
- HPC_{{#uppercase:amphora2}}_EXE - test data directory
- HPC_{{#uppercase:amphora2}}_TAX- taxonomy data directory
- HPC_{{#uppercase:amphora2}}_TREE - tree data directory