Difference between revisions of "Albacore"

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m (Text replacement - "#uppercase" to "uc")
 
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
 
==System Variables==
 
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
+
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
+
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory
  
 
<!--Configuration-->
 
<!--Configuration-->

Latest revision as of 21:10, 6 December 2019

Description

albacore website  

Albacore is the official basecaller for data generated with equipment produced by Oxford Nanopore Technologies such as minION, GridION, and PromethION.

Environment Modules

Run module spider albacore to find out what environment modules are available for this application.

System Variables

  • HPC_ALBACORE_DIR - installation directory
  • HPC_ALBACORE_BIN - executable directory