ATRAM

Description

atram website  

aTRAM does targeted de novo assembly of loci from paired-end Illumina runs and consists of the following tools:

• format_sra.pl: this script creates an aTRAM database from an Illumina paired-end short-read archive.
• aTRAM.pl: this script runs aTRAM with a target sequence and the formatted short-read archive.

Required Modules

Serial

• atram

System Variables

• HPC_ATRAM_DIR

Citation

If you publish research that uses atram you have to cite it as follows: WRITE_CITATION_HERE

Validation

• Validated 4/5/2018