Difference between revisions of "ATRAM"
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Revision as of 16:00, 27 May 2022
Description
aTRAM does targeted de novo assembly of loci from paired-end Illumina runs and consists of the following tools:
- format_sra.pl: this script creates an aTRAM database from an Illumina paired-end short-read archive.
- aTRAM.pl: this script runs aTRAM with a target sequence and the formatted short-read archive.
Required Modules
Serial
- atram
System Variables
- HPC_ATRAM_DIR
Citation
If you publish research that uses atram you have to cite it as follows: WRITE_CITATION_HERE
Validation
- Validated 4/5/2018