Difference between revisions of "AStalavista"

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==System Variables==
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
{{#if: {{#var: conf}}|==Configuration==
{{#if: {{#var: conf}}|==Configuration==

Revision as of 21:11, 6 December 2019


astalavista website  

AStalavista is a computer program to extract alternative splicing (AS) events from a given genomic annotation of exon-intron gene coordinates. By comparing all given transcripts, AStalavista detects the variations in their splicing structure and identify all AS events (like exon skipping, alternate donor, etc) by assigning to each of them an AS code.

Required Modules


  • astalavista

System Variables

  • HPC_ASTALAVISTA_DIR - installation directory


  • Validate 4/5/2018