Difference between revisions of "AStalavista"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:NGSCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|astalavista}} |{{#vardefine:url|http:/...") |
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==System Variables== | ==System Variables== | ||
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{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 14:56, 12 August 2022
Description
AStalavista is a computer program to extract alternative splicing (AS) events from a given genomic annotation of exon-intron gene coordinates. By comparing all given transcripts, AStalavista detects the variations in their splicing structure and identify all AS events (like exon skipping, alternate donor, etc) by assigning to each of them an AS code.
Environment Modules
Run module spider astalavista to find out what environment modules are available for this application.
System Variables
- HPC_ASTALAVISTA_DIR - installation directory