Difference between revisions of "AFNI"

Jump to navigation Jump to search
(One intermediate revision by the same user not shown)
Line 33: Line 33:
==System Variables==
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR
* HPC_{{uc:{{#var:app}}}}_DIR
{{#if: {{#var: conf}}|==Configuration==
{{#if: {{#var: conf}}|==Configuration==

Latest revision as of 20:53, 6 December 2019


afni website  

AFNI is a set of C programs for processing, analyzing, and displaying functional MRI (FMRI) data - a technique for mapping human brain activity. It should be used for research purposes only.

Required Modules


  • afni

System Variables


Additional Information

This is a GUI software. Follow the instructions at https://wiki.rc.ufl.edu/doc/GUI_Programs

Basic usage:

module load gui
launch_gui_session --module afni -e afni

Connect with xpra locally using the xpra command

xpra attach ssh:jdoe@i111a-s222.rc.ufl.edu:3713


If you publish research that uses afni you have to cite it as follows:

RW Cox. AFNI: Software for analysis and visualization of functional magnetic resonance neuroimages. Computers and Biomedical Research, 29:162-173, 1996.

RW Cox and JS Hyde. Software tools for analysis and visualization of FMRI Data. NMR in Biomedicine, 10:171-178, 1997.

S Gold, B Christian, S Arndt, G Zeien, T Cizadlo, DL Johnson, M Flaum, and NC Andreasen. Functional MRI statistical software packages: a comparative analysis. Human Brain Mapping, 6:73-84, 1998.