Difference between revisions of "3d-dna"

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==System Variables==
==System Variables==
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory
* HPC_{{uc:{{#var:app}}}}_BIN - executable directory

Revision as of 21:10, 6 December 2019


3d-dna website  

This code is designed to enable anyone to reproduce the Hs2-HiC and the AaegL4 genomes reported in: Dudchenko et al., De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds. Science, 2017.

Required Modules


  • 3d-dna

System Variables

  • HPC_3D-DNA_DIR - installation directory
  • HPC_3D-DNA_BIN - executable directory