Installed Software
The following is a list of the installed software packages maintained at the UF HPC Center
Software
| Software | Version | Home Website |
|---|---|---|
| Amber | 9,10 | amber.scripps.edu |
| Ansys | 10.0 | www.ansys.com |
| AUTO3DEM | 3.05 | cryoem.ucsd.edu |
| Blender | 2.45 | www.blender.org |
| ccp4 | 6.0.2 | www.ccp4.ac.uk |
| CMSSW | 2_0_6 | CMS Software Twiki |
| cnssolve | 1.2 | cns.csb.yale.edu |
| Crystal | 1.0.2 | |
| CPMD | 3.11.1 | www.cpmd.org; |
| dlpoly | 3.0.7 | www.cse.clrc.ac.uk |
| dock | 6.2 | dock.compbio.ucsf.edu |
| Ensight | 8.2 | www.ensight.com |
| Fragstats | 2.0 | www.umass.edu |
| FSL | 3.3.11 | www.fmrib.ox.ac.uk |
| Garli | 0.942 | Garli |
| gaussian | 03 | www.gaussian.com |
| Gromacs | 3.3.1 | www.gromacs.org |
| GULP | 3.1 | www.ivec.org |
| hypre | 2.0.0 | Lawrence Livermore National Labs |
| Matlab | 7.6 | www.mathworks.com |
| meme | 3.0.13 | meme.sdsc.edu |
| metis | 4.0 | glaros.dtc.umn.edu |
| mpiBlast | 1.5.0 | NCBI |
| MrBayes | 3.1.2 | mrbayes.scs.fsu.edu |
| NAMD | 2.6 | www.ks.uiuc.edu |
| PWscf | 3.0 | www.pwscf.org |
| Rosetta | 2.1.2 | www.rosettacommons.org |
| R | 2.5.0 | www.r-project.org |
| SAS | 9.1 | SAS |
| Siesta | 2.0 | www.uam.es |
| Stata | 10 | Stata |
| VASP | 4.6.28 | cms.mpi.univie.ac.at |
| VTune | 9.1 | [1] |
Libraries
| Library | Version | Compiler | Location |
|---|---|---|---|
| FFTW | 2.1.5 | Intel | /opt/intel/fftw/2.1.5/lib |