Reference Data
UFRC maintains a repository of reference data that can be accessed by all HiPerGator users. The primary purposes of this repository are convenience and efficient use of filesystem space. We download and or build reference datasets and configure applications we make available through the Environment Modules System to automatically make use of the available reference data. We also would like to avoid seeing multiple users download many copies of the same large reference datasets that are of general interest to our clients. Having UFRC host common reference data also means that a research group does not have to use their Blue or Orange quota to host a redundant copy of common reference data.
Use https://support.rc.ufl.edu to request either addition of reference data or to ask for an addition of a directory that you can put reference data into for shared use.
The following is not an exhaustive list of the hosted reference data. If an existing reference is missing from the list below please let us know and we will update the list.
Application-Specific Data
Genome Data
- 3k Rice genomes - reference/genomes/rice3k - from http://gigadb.org/dataset/200001, downloaded from SRA.