Installed Software
The following is a list of the installed software packages maintained at the UF HPC Center
Software
| Software | Version | Home Website |
|---|---|---|
| hypre | 2.0.0 | Lawrence Livermore National Labs |
| GULP | 3.0.1 | www.ivec.org |
| Gromacs | 3.3.1 | www.gromacs.org |
| Amber | 9 | amber.scripps.edu |
| gaussian | 03 | www.gaussian.com |
| Abaqus | 6.6-1 | www.abaqus.com |
| Adina | 8.3 | www.adina.com |
| Ansys | 10.0 | www.ansys.com |
| mpiBlast | 1.3.0 | NCBI |
| ccp4 | 6.0.2 | www.ccp4.ac.uk |
| Ensight | 8.2 | www.ensight.com |
| cnssolve | 1.1 | cns.csb.yale.edu |
| dlpoly | 3.0.2 | www.cse.clrc.ac.uk |
| dock | 6.0 | dock.compbio.ucsf.edu |
| Eman | 1.8 | blake.bcm.tms.edu |
| PWscf | 3.0 | www.pwscf.org |
| Fragstats | 2.0 | www.umass.edu |
| FSL | 3.3 | www.fmrib.ox.ac.uk |
| Geant | 4.8.2 | geant4.web.cern.ch |
| meme | 3.0.13 | meme.sdsc.edu |
| metis | 4.0 | glaros.dtc.umn.edu |
| NAMD | 2.6 | www.ks.uiuc.edu |
| R | 2.2.1 | [1] |
| Rosetta | 2.1.1 | www.rosettacommons.org |
| Siesta | 2.0 | www.uam.es |
| VASP | 4.6.28 | cms.mpi.univie.ac.at |
Software Not Installed
- Matlab - We do not have a license for this softare, but it is possible to export matlab programs into executable binaries using the matlab compiler, and then run those executables on the cluster.