Galaxy Configuration - Running Jobs

• job_conf.xml

{{#fileAnchor: job_conf.xml}} Download raw source of the [{{#fileLink: job_conf.xml}} job_conf.xml] file.

<?xml version="1.0"?>
<job_conf>
    <plugins workers="5">
        <!-- "workers" is the number of threads for the runner's work queue.
             The default from <plugins> is used if not defined for a <plugin>.
          -->
          <!--        <plugin id="cli" type="runner" load="galaxy.jobs.runners.cli:ShellJobRunner" /> -->
        <plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="2"/>
        <plugin id="drmaa" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner"/>
        <!--        <plugin id="pbs" type="runner" load="galaxy.jobs.runners.pbs:PBSJobRunner"/> -->
    </plugins>
    <handlers default="handlers">
        <!-- Additional job handlers - the id should match the name of a
             [server:<id>] in universe_wsgi.ini.
         -->
        <handler id="handler0" tags="handlers"/>
        <handler id="handler1" tags="handlers"/>
        <!--
        <handler id="handler2" tags="handlers"/>
        -->
        <!--
        <handler id="special_handler0" tags="special_handlers"/>
        <handler id="special_handler1" tags="special_handlers"/>
        <handler id="trackster_handler"/>
         -->
    </handlers>
    <destinations default="dynamic">
        <!-- Destinations define details about remote resources and how jobs
             should be executed on those remote resources. -->
        <destination id="local" runner="local" tags="head"/>
        <destination id="dynamic" runner="dynamic">
            <!-- A destination that represents a method in the dynamic runner. -->
            <param id="function">default</param>
            <param id="type">python</param>
        </destination>
        <destination id="moab" runner="drmaa" />
            <!-- TODO: The real user options should maybe not be considered runner params. -->
            <!--
            <param id="galaxy_external_runjob_script">scripts/drmaa_external_runner.sh</param>
            <param id="galaxy_external_killjob_script">scripts/drmaa_external_killer.sh</param>
            <param id="galaxy_external_chown_script">scripts/external_chown_script.sh</param>
            -->
            <!--            <destination id="torque" runner="pbs" /> -->
        <destination id="local" runner="local" />
        <!--        <destination id="qsub" runner="cli">
            <param id="job_plugin">Torque</param>
        </destination>
        -->
        <!--
        <destination id="ssh_torque" runner="cli">
            <param id="shell_plugin">SecureShell</param>
            <param id="job_plugin">Torque</param>
            <param id="shell_username">foo</param>
            <param id="shell_hostname">foo.example.org</param>
            <param id="Job_Execution_Time">24:00:00</param>
        </destination>