Search results

• CNV-Sim
  [[Category:Software]][[Category:Biology]][[Category:Phylogenetics]] ...ariations (duplications/deletions) varies between individuals in the human population.
  3 KB (321 words) - 17:28, 10 June 2022
• Alder
  [[Category:Software]][[Category:biology]][[Category:genomics]] ...weighted linkage disequilibrium (LD) statistic for making inference about population admixture described in Loh P-R, Lipson M, Patterson N, Moorjani P, Pickrell
  3 KB (305 words) - 12:33, 12 August 2022
• CLUMPP
  [[Category:Software]][[Category:Biology]] ...is a program that deals with label switching and multimodality problems in population-genetic cluster analyses. CLUMPP permutes the clusters output by independen
  3 KB (351 words) - 18:33, 12 August 2022
• Jasper
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] ....0 for human, with Illumina reads sequenced from many individuals from the population.
  3 KB (354 words) - 16:42, 14 December 2023
• Haphpipe
  [[Category:Software]][[Category:Phylogenetics]][[Category:Biology]] HAplotype and PHylodynamics pipeline for viral assembly, population genetics, and phylodynamics.
  3 KB (405 words) - 16:40, 14 March 2023
• Vcftools
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] ...ng with VCF files: validating, merging, comparing and calculate some basic population genetic statistics.
  3 KB (400 words) - 20:55, 12 August 2022
• SHEsisPlus
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] ...er PI, Daly MJ, Sham PC.PLINK: a tool set for whole-genome association and population-based linkage analyses. Am J Hum Genet 2007 Sep;81(3):559-75. Epub 2007 Jul
  3 KB (344 words) - 15:04, 19 August 2022
• AltAnalyze
  [[Category:Software]][[Category:Biology]][[Category:Genomics]] ...g of raw RNASeq or microarray data files, advanced methods for single-cell population discovery, differential expression analyses, analysis of alternative splici
  3 KB (398 words) - 19:14, 10 June 2022
• BayeScan
  [[Category:Software]][[Category:Biology]][[Category:Variant Calling]] Foll M, Fischer MC, Heckel G and L Excoffier (2010) Estimating population structure from AFLP amplification intensity. Molecular Ecology 19: 4638-464
  3 KB (402 words) - 18:10, 12 August 2022
• Phyluce
  [[Category:Software]][[Category:Biology]][[Category:NGS]][[Category:Sequencing]] ...llection from other types of loci for phylogenomic studies at the species, population, and individual levels.
  4 KB (517 words) - 18:23, 21 August 2022
• Stacks
  [[Category:Software]][[Category:Biology]][[Category:Genomics]][[Category:NGS]] ...ps from RAD-Tag Illumina sequence data, but can also be readily applied to population studies, and phylogeography.
  4 KB (658 words) - 21:20, 2 January 2023

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